ENSGALG00000016802


Gallus gallus

Features
Gene ID: ENSGALG00000016802
  
Biological name :
  
Synonyms : Gallus gallus pinopsin-like (LOC771085), mRNA.
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 135670906
Gene end: 135744664
  
Corresponding Affymetrix probe sets: GgaAffx.10755.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027074
NCBI entrez gene - 771085     See in Manteia.
RefSeq - NM_001318431
RefSeq - XM_004938518
RefSeq Peptide - NP_001305360
swissprot - F1P4Q2
Ensembl - ENSGALG00000016802
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmtops2aENSDARG00000061515Danio rerio
 tmtops2bENSDARG00000027822Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OPN3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSGALG0000001076235
OPNP / OPN1LW* / OPN1MW* / P0DN78* / O35599* / P04000* / P04001* / P0DN77* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive* / Medium-wave-sensitive opsin 1 * / opsin 1, medium wave sen...ENSGALG0000000492430
OPNVA / vertebrate ancient opsin isoform 2 ENSGALG0000001051330
OPN4 / melanopsin / Q9QXZ9* / Q9UHM6* / opsin 4*ENSGALG0000000193427
P28683 / OPN1MSW / Green-sensitive opsin ENSGALG0000000284826
RHO / rhodopsin / P08100* / P15409*ENSGALG0000002074526
RRH / visual pigment-like receptor peropsin / O14718* / O35214* / retinal pigment epithelium-derived rhodopsin homolog*ENSGALG0000001218123
OPN5L1ENSGALG0000001515323
OPN5 / opsin-5 / Q6U736* / Q6VZZ7*ENSGALG0000001672523
OPN4-1 / photopigment melanopsin-like ENSGALG0000004166223
OPN5L2ENSGALG0000001669921
ENSGALG0000002762420


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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