ENSGALG00000001934


Gallus gallus

Features
Gene ID: ENSGALG00000001934
  
Biological name :OPN4
  
Synonyms : melanopsin / OPN4
  
Possible biological names infered from orthology : opsin 4 / Q9QXZ9 / Q9UHM6
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 2328253
Gene end: 2350868
  
Corresponding Affymetrix probe sets: GgaAffx.1271.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002985
NCBI entrez gene - 423609     See in Manteia.
RefSeq - NM_001044653
RefSeq - XM_015287980
RefSeq Peptide - NP_001038118
swissprot - F1NEY8
Ensembl - ENSGALG00000001934
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 opn4.1ENSDARG00000007553Danio rerio
 opn4aENSDARG00000022098Danio rerio
 opn4bENSDARG00000053929Danio rerio
 OPN4ENSG00000122375Homo sapiens
 Opn4ENSMUSG00000021799Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OPN4-1 / photopigment melanopsin-like ENSGALG0000004166239
OPN3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSGALG0000001076219
Gallus gallus pinopsin-like (LOC771085), mRNA.ENSGALG0000001680219
OPN5L1ENSGALG0000001515318
OPN5 / opsin-5 / Q6U736* / Q6VZZ7*ENSGALG0000001672518
P28683 / OPN1MSW / Green-sensitive opsin ENSGALG0000000284817
OPNP / OPN1LW* / OPN1MW* / P0DN78* / O35599* / P04000* / P04001* / P0DN77* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive* / Medium-wave-sensitive opsin 1 * / opsin 1, medium wave sen...ENSGALG0000000492417
OPNVA / vertebrate ancient opsin isoform 2 ENSGALG0000001051317
OPN5L2ENSGALG0000001669917
RRH / visual pigment-like receptor peropsin / O14718* / O35214* / retinal pigment epithelium-derived rhodopsin homolog*ENSGALG0000001218116
RHO / rhodopsin / P08100* / P15409*ENSGALG0000002074516
ENSGALG0000002762413


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0007603 phototransduction, visible light IMP
 biological_processGO:0016038 absorption of visible light IDA
 biological_processGO:0016056 rhodopsin mediated signaling pathway IEA
 biological_processGO:0018298 protein-chromophore linkage IDA
 biological_processGO:0042752 regulation of circadian rhythm IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0071482 cellular response to light stimulus IMP
 cellular_componentGO:0005623 cell IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0044298 cell body membrane IDA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0005502 11-cis retinal binding IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IEA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
G alpha (q) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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