ENSDARG00000053929


Danio rerio

Features
Gene ID: ENSDARG00000053929
  
Biological name :opn4b
  
Synonyms : opn4b / opsin 4b
  
Possible biological names infered from orthology : Melanopsin / OPN4 / opsin 4 / Q9QXZ9 / Q9UHM6
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 26084882
Gene end: 26153101
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000070530
NCBI entrez gene - 100884131     See in Manteia.
RefSeq - NM_001258224
RefSeq Peptide - NP_001245153
swissprot - E7FEB1
ZFIN ID - ZDB-GENE-080415-3
Ensembl - ENSDARG00000053929
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN4ENSGALG00000001934Gallus gallus
 OPN4ENSG00000122375Homo sapiens
 Opn4ENSMUSG00000021799Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209867
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755348
opn4xa / opsin 4xaENSDARG0000007912936
opn4xb / opsin 4xbENSDARG0000010325933
opn7a / opsin 7, group member aENSDARG0000002420819
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646019
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782218
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224618
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151518
opn9 / opsin 9ENSDARG0000010423118
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953417
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062917
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219316
valopa / vertebrate ancient long opsin aENSDARG0000002115016
parapinopsinb / parapinopsin bENSDARG0000004467216
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486116
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486216
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277516
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011016
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066616


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IDA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IDA


Pathways (from Reactome)
Pathway description
G alpha (q) signalling events
Opsins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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