ENSDARG00000079129


Danio rerio

Features
Gene ID: ENSDARG00000079129
  
Biological name :opn4xa
  
Synonyms : opn4xa / opsin 4xa
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 1294463
Gene end: 1320114
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000068107
NCBI entrez gene - 100331502     See in Manteia.
RefSeq - NM_001256077
RefSeq Peptide - NP_001243006
swissprot - F1QZ18
ZFIN ID - ZDB-GENE-110622-1
Ensembl - ENSDARG00000079129
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN4-1ENSGALG00000041662Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn4xb / opsin 4xbENSDARG0000010325951
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209838
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392938
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755336
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277519
opn7a / opsin 7, group member aENSDARG0000002420818
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224618
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646018
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151518
opn9 / opsin 9ENSDARG0000010423118
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727417
valopa / vertebrate ancient long opsin aENSDARG0000002115017
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782217
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3ENSDARG0000004427917
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486117
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486217
opn7d / opsin 7, group member dENSDARG0000006812417
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011017
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066617
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062917


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IDA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr