ENSDARG00000036460


Danio rerio

Features
Gene ID: ENSDARG00000036460
  
Biological name :tmtops3a
  
Synonyms : teleost multiple tissue opsin 3a / tmtops3a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 31766144
Gene end: 31780794
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000070158
swissprot - F1QPE1
ZFIN ID - ZDB-GENE-130828-1
Ensembl - ENSDARG00000036460
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062957
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151548
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782247
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224645
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277531
CABZ01063651.1ENSDARG0000010367431
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209828
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392928
valopa / vertebrate ancient long opsin aENSDARG0000002115027
parapinopsina / parapinopsin aENSDARG0000011697627
Q9W6A6 / opn1mw4 / opsin 1 (cone pigments), medium-wave-sensitive, 4ENSDARG0000000063826
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219326
parapinopsinb / parapinopsin bENSDARG0000004467226
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486126
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486226
valopb / vertebrate ancient long opsin bENSDARG0000005418126
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066626
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1ENSDARG0000009700826
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755325
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727425


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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