ENSDARG00000090629


Danio rerio

Features
Gene ID: ENSDARG00000090629
  
Biological name :tmtops3b
  
Synonyms : teleost multiple tissue opsin 3b / tmtops3b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 26689262
Gene end: 26692647
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105609
Ensembl peptide - ENSDARP00000117519
NCBI entrez gene - 102031126     See in Manteia.
RefSeq - NM_001282375
RefSeq Peptide - NP_001269304
swissprot - E7FF02
swissprot - A0A0N9NKH0
swissprot - F1QZS4
ZFIN ID - ZDB-GENE-091204-311
Ensembl - ENSDARG00000090629
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646061
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782254
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151552
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224649
CABZ01063651.1ENSDARG0000010367435
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277532
valopa / vertebrate ancient long opsin aENSDARG0000002115029
parapinopsinb / parapinopsin bENSDARG0000004467229
parapinopsina / parapinopsin aENSDARG0000011697629
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209828
valopb / vertebrate ancient long opsin bENSDARG0000005418128
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219327
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727427
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3ENSDARG0000004427927
opn1mw2 / opsin 1 (cone pigments), medium-wave-sensitive, 2ENSDARG0000004428027
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486127
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486227
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392927
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066627
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1ENSDARG0000009700827


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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