ENSDARG00000032246


Danio rerio

Features
Gene ID: ENSDARG00000032246
  
Biological name :tmtopsb
  
Synonyms : teleost multiple tissue opsin b / tmtopsb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 26134029
Gene end: 26197398
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000037563
Ensembl peptide - ENSDARP00000121360
Ensembl peptide - ENSDARP00000147895
NCBI entrez gene - 100334480     See in Manteia.
RefSeq - NM_001312679
RefSeq Peptide - NP_001299608
swissprot - F1R929
swissprot - E7F1P3
swissprot - R9R6L5
ZFIN ID - ZDB-GENE-091118-50
Ensembl - ENSDARG00000032246
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782242
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151542
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062939
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646038
CABZ01063651.1ENSDARG0000010367437
parapinopsina / parapinopsin aENSDARG0000011697627
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277525
Q9W6A8 / opn1sw2 / opsin 1 (cone pigments), short-wave-sensitive 2ENSDARG0000001727423
valopa / vertebrate ancient long opsin aENSDARG0000002115023
parapinopsinb / parapinopsin bENSDARG0000004467223
Q8AYN0 / opn1lw2 / opsin 1 (cone pigments), long-wave-sensitive, 2 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486123
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392923
valopb / vertebrate ancient long opsin bENSDARG0000005418123
rho / P35359 / rhodopsin / P08100*ENSDARG0000000219322
opn4a / opsin 4a (melanopsin) / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000002209822
Q8AYM7 / opn1mw3 / opsin 1 (cone pigments), medium-wave-sensitive, 3ENSDARG0000004427922
Q9W6A7 / opn1lw1 / opsin 1 (cone pigments), long-wave-sensitive, 1 / OPN1MW* / P04000* / P0DN77* / O35599* / P0DN78* / P04001* / OPN1LW* / OPN1MW3* / OPN1MW2* / opsin 1, long wave sensitive...ENSDARG0000004486222
opn1sw1 / opsin 1 (cone pigments), short-wave-sensitive 1 / P51491* / OPN1SW* / P03999* / Short-wave-sensitive opsin 1 * / opsin 1, short wave sensitive*ENSDARG0000004567722
rhol / rhodopsin, like / RHO* / P15409* / P08100* / rhodopsin*ENSDARG0000007066622
Q9W6A5 / opn1mw1 / opsin 1 (cone pigments), medium-wave-sensitive, 1ENSDARG0000009700822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR001760  Opsin
 IPR002962  Peropsin
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr