ENSGALG00000017044


Gallus gallus

Features
Gene ID: ENSGALG00000017044
  
Biological name :TRPC4
  
Synonyms : transient receptor potential cation channel subfamily C member 4 / TRPC4
  
Possible biological names infered from orthology : Q9QUQ5 / Q9UBN4
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 171798604
Gene end: 171935943
  
Corresponding Affymetrix probe sets: Gga.12709.1.S1_s_at (Chicken Array)   Gga.13695.1.S1_at (Chicken Array)   Gga.18791.1.A1_at (Chicken Array)   Gga.18791.1.S1_at (Chicken Array)   GgaAffx.25153.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000029480
NCBI entrez gene - 418895     See in Manteia.
RefSeq - XM_417089
swissprot - E1C0Y0
Ensembl - ENSGALG00000017044
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trpc4aENSDARG00000070507Danio rerio
 trpc4bENSDARG00000102017Danio rerio
 TRPC4ENSG00000133107Homo sapiens
 Trpc4ENSMUSG00000027748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRPC5 / transient receptor potential cation channel subfamily C member 5 / Q9QX29* / Q9UL62*ENSGALG0000000797267
TRPC1 / transient receptor potential cation channel subfamily C member 1 / P48995*ENSGALG0000000263936
TRPC6 / transient receptor potential cation channel subfamily C member 6 / Q61143* / Q9Y210*ENSGALG0000002941633
TRPC7 / transient receptor potential cation channel subfamily C member 7 / Q9HCX4* / Q9WVC5*ENSGALG0000000629732
TRPC3 / transient receptor potential cation channel subfamily C member 3 / Q13507*ENSGALG0000001187532


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR002153  Transient receptor potential channel, canonical
 IPR004729  Transient receptor potential channel
 IPR005460  Transient receptor potential channel, canonical 4
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006828 manganese ion transport IBA
 biological_processGO:0014051 gamma-aminobutyric acid secretion IEA
 biological_processGO:0048709 oligodendrocyte differentiation IEA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070509 calcium ion import IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005901 caveola IEA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030863 cortical cytoskeleton IEA
 cellular_componentGO:0034704 calcium channel complex IEA
 cellular_componentGO:0045121 membrane raft IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0008013 beta-catenin binding IEA
 molecular_functionGO:0015279 store-operated calcium channel activity IEA
 molecular_functionGO:0045296 cadherin binding IEA
 molecular_functionGO:0070679 inositol 1,4,5 trisphosphate binding IEA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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