ENSGALG00000029416


Gallus gallus

Features
Gene ID: ENSGALG00000029416
  
Biological name :TRPC6
  
Synonyms : transient receptor potential cation channel subfamily C member 6 / TRPC6
  
Possible biological names infered from orthology : Q61143 / Q9Y210
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 183074878
Gene end: 183166584
  
Corresponding Affymetrix probe sets: Gga.4996.1.S1_s_at (Chicken Array)   GgaAffx.11030.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051533
Ensembl peptide - ENSGALP00000058231
NCBI entrez gene - 418989     See in Manteia.
RefSeq - XM_417184
RefSeq - XM_004938840
swissprot - A0A1D5PZ23
swissprot - A0A1D5PFG9
Ensembl - ENSGALG00000029416
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trpc6aENSDARG00000056625Danio rerio
 trpc6bENSDARG00000067730Danio rerio
 TRPC6ENSG00000137672Homo sapiens
 Trpc6ENSMUSG00000031997Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRPC7 / transient receptor potential cation channel subfamily C member 7 / Q9HCX4* / Q9WVC5*ENSGALG0000000629767
TRPC3 / transient receptor potential cation channel subfamily C member 3 / Q13507*ENSGALG0000001187567
TRPC4 / transient receptor potential cation channel subfamily C member 4 / Q9QUQ5* / Q9UBN4*ENSGALG0000001704434
TRPC5 / transient receptor potential cation channel subfamily C member 5 / Q9QX29* / Q9UL62*ENSGALG0000000797233
TRPC1 / transient receptor potential cation channel subfamily C member 1 / P48995*ENSGALG0000000263930


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR002153  Transient receptor potential channel, canonical
 IPR004729  Transient receptor potential channel
 IPR005462  Transient receptor potential channel, canonical 6
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007204 positive regulation of cytosolic calcium ion concentration IEA
 biological_processGO:0032414 positive regulation of ion transmembrane transporter activity IEA
 biological_processGO:0051928 positive regulation of calcium ion transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0036057 slit diaphragm IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005261 cation channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0015279 store-operated calcium channel activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0070679 inositol 1,4,5 trisphosphate binding IEA


Pathways (from Reactome)
Pathway description
Effects of PIP2 hydrolysis
Elevation of cytosolic Ca2+ levels
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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