ENSGALG00000028817


Gallus gallus

Features
Gene ID: ENSGALG00000028817
  
Biological name :OTX1
  
Synonyms : orthodenticle homeobox 1 / OTX1
  
Possible biological names infered from orthology : Homeobox protein OTX1 / P32242 / P80205
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 9376070
Gene end: 9377980
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000041020
NCBI entrez gene - 100858585     See in Manteia.
RefSeq - XM_015278112
swissprot - R4GG58
Ensembl - ENSGALG00000028817
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 otx1ENSDARG00000094992Danio rerio
 OTX1ENSG00000115507Homo sapiens
 Otx1ENSMUSG00000005917Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OTX2 / orthodenticle homeobox 2 / P32243*ENSGALG0000003488961
DMBX1 / diencephalon/mesencephalon homeobox 1 / Q8NFW5* / Q91ZK4* / Diencephalon/mesencephalon homeobox protein 1 *ENSGALG0000001043622
PITX1 / pituitary homeobox 1 / PITX3* / O35160* / P70314* / O75364* / P78337* / Pituitary homeobox 3 * / paired like homeodomain 1* / paired like homeodomain 3* / paired-like homeodomain t...ENSGALG0000003023720
PITX2 / pituitary homeobox 2 / Q99697* / P97474* / paired like homeodomain 2* / paired-like homeodomain transcription factor 2*ENSGALG0000004249220
ENSGALG0000000561319
PRRX1 / paired mesoderm homeobox protein 1 / P54821* / P63013* / paired related homeobox 1*ENSGALG0000000332418
PRRX2 / paired related homeobox 2 / Q99811*ENSGALG0000002823617
GSC / homeobox protein goosecoid / P56915* / Q02591* / goosecoid homeobox*ENSGALG0000001097413
GSC2 / goosecoid homeobox 2 / O15499*ENSGALG0000004424513


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003025  Transcription factor Otx
 IPR003026  Transcription factor Otx1
 IPR009057  Homeobox-like domain superfamily
 IPR013851  Transcription factor Otx, C-terminal
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0022037 metencephalon development IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0030901 midbrain development IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048852 diencephalon morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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