ENSGALG00000034316


Gallus gallus

Features
Gene ID: ENSGALG00000034316
  
Biological name :CNOT6
  
Synonyms : CCR4-NOT transcription complex subunit 6 / CNOT6
  
Possible biological names infered from orthology : Q8K3P5 / Q9ULM6
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 13852683
Gene end: 13864572
  
Corresponding Affymetrix probe sets: Gga.13588.1.S1_at (Chicken Array)   Gga.19617.1.S1_at (Chicken Array)   Gga.9988.1.S1_at (Chicken Array)   GgaAffx.9243.1.S1_s_at (Chicken Array)   GgaAffx.9243.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046628
NCBI entrez gene - 416293     See in Manteia.
RefSeq - XM_015293942
RefSeq - XM_015293943
swissprot - A0A1D5P1T8
Ensembl - ENSGALG00000034316
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cnot6aENSDARG00000008255Danio rerio
 cnot6bENSDARG00000101072Danio rerio
 CNOT6ENSG00000113300Homo sapiens
 Cnot6ENSMUSG00000020362Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CNOT6L / CCR4-NOT transcription complex subunit 6 like / Q8VEG6* / Q96LI5*ENSGALG0000001033378
ANGEL2 / protein angel homolog 2 / Q8K1C0* / Q5VTE6* / angel homolog 2* / Mus musculus angel homolog 2 (Angel2), transcript variant 3, mRNA.*ENSGALG0000000980220
ANGEL1 / angel homolog 1 / 1 * / Q8VCU0* / Q9UNK9*ENSGALG0000001037220
NOCT / nocturnin / O35710* / Q9UK39*ENSGALG0000003295718
PDE12 / phosphodiesterase 12 / Q3TIU4* / Q6L8Q7* / 2,5-phosphodiesterase 12 *ENSGALG0000000562010


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay IEA
 biological_processGO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 biological_processGO:2000327 positive regulation of nuclear receptor transcription coactivator activity IEA
 cellular_componentGO:0030014 CCR4-NOT complex IEA
 molecular_functionGO:0004532 exoribonuclease activity IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr