ENSGALG00000035557


Gallus gallus

Features
Gene ID: ENSGALG00000035557
  
Biological name :BARX1
  
Synonyms : BARX1 / Homeobox protein BarH-like 1b / Q9DED6
  
Possible biological names infered from orthology : BARX homeobox 1 / Homeobox protein BarH-like 1 / Q9ER42 / Q9HBU1
  
Species: Gallus gallus
  
Chr. number: 12
Strand: 1
Band:
Gene start: 6139852
Gene end: 6142332
  
Corresponding Affymetrix probe sets: Gga.412.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054219
NCBI entrez gene - 374017     See in Manteia.
RefSeq - NM_204193
RefSeq Peptide - NP_989524
swissprot - A0A1D5PMY1
swissprot - Q9DED6
Ensembl - ENSGALG00000035557
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 barx1ENSDARG00000007407Danio rerio
 BARX1ENSG00000131668Homo sapiens
 Barx1ENSMUSG00000021381Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BARX2 / BARX homeobox 2 / O08686* / Q9UMQ3* / Homeobox protein BarH-like 2 *ENSGALG0000002938243
BSX / Q6RFL5 / Brain-specific homeobox protein homolog / Q3C1V8* / Q810B3* / brain specific homeobox*ENSGALG0000000651529
HLX / H2.0 like homeobox / Q14774* / Q61670* / H2.0-like homeobox protein *ENSGALG0000003725724
BARHL2 / BarH like homeobox 2 / Q8VIB5* / Q9NY43* / BarH-like 2 homeobox protein *ENSGALG0000004006924
DBX1 / developing brain homeobox 1 / A6NMT0* / P52950* / Homeobox protein DBX1 *ENSGALG0000000396523
LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSGALG0000003418923
BARHL1 / BarH like homeobox 1 / P63157* / Q9BZE3* / BarH-like 1 homeobox protein *ENSGALG0000004321723
DBX2 / developing brain homeobox 2 / Q6ZNG2*ENSGALG0000000960422
HHEX / hematopoietically-expressed homeobox protein HHEX / P43120* / Q03014* / hematopoietically expressed homeobox*ENSGALG0000003000822
ENSGALG0000000219120
TLX1 / T-cell leukemia homeobox protein 1 / P31314* / T cell leukemia homeobox 1*ENSGALG0000000783119
NKX6-2 / NK6 homeobox 2 / Q9C056*ENSGALG0000001050019
NKX6-3 / NK6 homeobox 3 / A6NJ46* / Q3UHX8* / Homeobox protein Nkx-6.3 *ENSGALG0000001850318
NKX6-1 / NK6 homeobox 1 / P78426* / Q99MA9* / Homeobox protein Nkx-6.1 *ENSGALG0000003254518


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007267 cell-cell signaling IEA
 biological_processGO:0009888 tissue development IBA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0030178 negative regulation of Wnt signaling pathway IEA
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048513 animal organ development IBA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0055123 digestive system development IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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