ENSMUSG00000030306


Mus musculus

Features
Gene ID: ENSMUSG00000030306
  
Biological name :Tmtc1
  
Synonyms : Mus musculus transmembrane and tetratricopeptide repeat containing 1 (Tmtc1), transcript variant 2, mRNA. / Q3UV71 / Tmtc1
  
Possible biological names infered from orthology : Q8IUR5 / transmembrane and tetratricopeptide repeat containing 1
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: G3
Gene start: 148232430
Gene end: 148444389
  
Corresponding Affymetrix probe sets: 10549420 (MoGene1.0st)   1435261_at (Mouse Genome 430 2.0 Array)   1439855_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144991
Ensembl peptide - ENSMUSP00000056353
Ensembl peptide - ENSMUSP00000098335
Ensembl peptide - ENSMUSP00000115543
NCBI entrez gene - 387314     See in Manteia.
MGI - MGI:3039590
RefSeq - XM_017321670
RefSeq - NM_001347518
RefSeq - NM_198967
RefSeq - XM_006507071
RefSeq - XM_006507072
RefSeq Peptide - NP_945318
RefSeq Peptide - NP_001334447
swissprot - D6RG80
swissprot - Q3UV71
swissprot - A0A0N4SV81
Ensembl - ENSMUSG00000030306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmtc1ENSDARG00000063149Danio rerio
 TMTC1ENSGALG00000012956Gallus gallus
 TMTC1ENSG00000133687Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tmtc2 / Q56A06 / transmembrane and tetratricopeptide repeat containing 2 / Q8N394*ENSMUSG0000003601930
Tmtc4 / Q8BG19 / Transmembrane and TPR repeat-containing protein 4 / Q5T4D3* / transmembrane and tetratricopeptide repeat containing 4*ENSMUSG0000004159428
Tmtc3 / transmembrane and tetratricopeptide repeat containing 3 / Q6ZXV5*ENSMUSG0000003667626
Ogt / Q8CGY8 / UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / O15294* / O-linked N-acetylglucosamine (GlcNAc) transferase*ENSMUSG0000003416014


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013618  Domain of unknown function DUF1736
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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