ENSDARG00000063149


Danio rerio

Features
Gene ID: ENSDARG00000063149
  
Biological name :tmtc1
  
Synonyms : tmtc1 / transmembrane and tetratricopeptide repeat containing 1
  
Possible biological names infered from orthology : Mus musculus transmembrane and tetratricopeptide repeat containing 1 (Tmtc1), transcript variant 2, mRNA. / Q3UV71 / Q8IUR5
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 9394426
Gene end: 9466248
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000086446
Ensembl peptide - ENSDARP00000147436
Ensembl peptide - ENSDARP00000150744
NCBI entrez gene - 555449     See in Manteia.
swissprot - F1QF84
ZFIN ID - ZDB-GENE-070705-219
Ensembl - ENSDARG00000063149
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMTC1ENSGALG00000012956Gallus gallus
 TMTC1ENSG00000133687Homo sapiens
 Tmtc1ENSMUSG00000030306Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtc2a / transmembrane and tetratricopeptide repeat containing 2a / TMTC2* / Q8N394* / Q56A06* / transmembrane and tetratricopeptide repeat containing 2*ENSDARG0000004575332
tmtc4 / transmembrane and tetratricopeptide repeat containing 4 / Q5T4D3* / Q8BG19* / Transmembrane and TPR repeat-containing protein 4 *ENSDARG0000002044729
tmtc3 / transmembrane and tetratricopeptide repeat containing 3 / Q6ZXV5*ENSDARG0000006284628
tmtc2b / transmembrane and tetratricopeptide repeat containing 2b / TMTC2* / Q8N394* / Q56A06* / transmembrane and tetratricopeptide repeat containing 2*ENSDARG0000003527322
ogt.1 / O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 / OGT* / Q8CGY8* / O15294* / O-linked N-acetylglucosamine (GlcNAc) transferase* / UDP-N-acetylglucosamine--pept...ENSDARG0000010524316
ogt.2 / ogt.1 / O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 / OGT* / O15294* / Q8CGY8* / O-linked N-acetylglucosamine (GlcNAc) transferase* / UDP-N-acetylglucosami...ENSDARG0000009945515


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013105  Tetratricopeptide repeat 2
 IPR013618  Domain of unknown function DUF1736
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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