ENSDARG00000020447


Danio rerio

Features
Gene ID: ENSDARG00000020447
  
Biological name :tmtc4
  
Synonyms : tmtc4 / transmembrane and tetratricopeptide repeat containing 4
  
Possible biological names infered from orthology : Q5T4D3 / Q8BG19 / Transmembrane and TPR repeat-containing protein 4
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 31494941
Gene end: 31525126
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000113305
Ensembl peptide - ENSDARP00000156827
Ensembl peptide - ENSDARP00000148495
Ensembl peptide - ENSDARP00000118642
Ensembl peptide - ENSDARP00000117559
Ensembl peptide - ENSDARP00000109667
NCBI entrez gene - 560605     See in Manteia.
RefSeq - NM_001173502
RefSeq - XM_021478692
RefSeq Peptide - NP_001166973
swissprot - B0S6W0
swissprot - B0S6W3
swissprot - B0S6W2
swissprot - B0S6W1
ZFIN ID - ZDB-GENE-070912-148
Ensembl - ENSDARG00000020447
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMTC4ENSGALG00000016870Gallus gallus
 TMTC4ENSG00000125247Homo sapiens
 Tmtc4ENSMUSG00000041594Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtc3 / transmembrane and tetratricopeptide repeat containing 3 / Q6ZXV5*ENSDARG0000006284634
tmtc1 / transmembrane and tetratricopeptide repeat containing 1 / Q3UV71* / Q8IUR5* / Mus musculus transmembrane and tetratricopeptide repeat containing 1 (Tmtc1), transcript variant 2, mRNA.*ENSDARG0000006314934
tmtc2a / transmembrane and tetratricopeptide repeat containing 2a / TMTC2* / Q8N394* / Q56A06* / transmembrane and tetratricopeptide repeat containing 2*ENSDARG0000004575333
tmtc2b / transmembrane and tetratricopeptide repeat containing 2b / TMTC2* / Q8N394* / Q56A06* / transmembrane and tetratricopeptide repeat containing 2*ENSDARG0000003527318
ogt.2 / ogt.1 / O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 / OGT* / O15294* / Q8CGY8* / O-linked N-acetylglucosamine (GlcNAc) transferase* / UDP-N-acetylglucosami...ENSDARG0000009945516
ogt.1 / O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 / OGT* / Q8CGY8* / O15294* / O-linked N-acetylglucosamine (GlcNAc) transferase* / UDP-N-acetylglucosamine--pept...ENSDARG0000010524316


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013618  Domain of unknown function DUF1736
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr