ENSDARG00000045753


Danio rerio

Features
Gene ID: ENSDARG00000045753
  
Biological name :tmtc2a
  
Synonyms : tmtc2a / transmembrane and tetratricopeptide repeat containing 2a
  
Possible biological names infered from orthology : Q56A06 / Q8N394 / TMTC2 / transmembrane and tetratricopeptide repeat containing 2
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 10972585
Gene end: 11024844
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000067260
Ensembl peptide - ENSDARP00000131514
NCBI entrez gene - 564667     See in Manteia.
RefSeq - NM_001130603
RefSeq Peptide - NP_001124075
swissprot - F1R0Y9
swissprot - A0A0M3HEL6
ZFIN ID - ZDB-GENE-041210-299
Ensembl - ENSDARG00000045753
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMTC2ENSGALG00000010975Gallus gallus
 TMTC2ENSG00000179104Homo sapiens
 Tmtc2ENSMUSG00000036019Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmtc2b / transmembrane and tetratricopeptide repeat containing 2b / TMTC2* / Q8N394* / Q56A06* / transmembrane and tetratricopeptide repeat containing 2*ENSDARG0000003527353
tmtc1 / transmembrane and tetratricopeptide repeat containing 1 / Q3UV71* / Q8IUR5* / Mus musculus transmembrane and tetratricopeptide repeat containing 1 (Tmtc1), transcript variant 2, mRNA.*ENSDARG0000006314933
tmtc4 / transmembrane and tetratricopeptide repeat containing 4 / Q5T4D3* / Q8BG19* / Transmembrane and TPR repeat-containing protein 4 *ENSDARG0000002044729
tmtc3 / transmembrane and tetratricopeptide repeat containing 3 / Q6ZXV5*ENSDARG0000006284629
ogt.2 / ogt.1 / O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 / OGT* / O15294* / Q8CGY8* / O-linked N-acetylglucosamine (GlcNAc) transferase* / UDP-N-acetylglucosami...ENSDARG0000009945514
ogt.1 / O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 / OGT* / Q8CGY8* / O15294* / O-linked N-acetylglucosamine (GlcNAc) transferase* / UDP-N-acetylglucosamine--pept...ENSDARG0000010524314


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013618  Domain of unknown function DUF1736
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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