ENSMUSG00000057596


Mus musculus

Features
Gene ID: ENSMUSG00000057596
  
Biological name :Trim30d
  
Synonyms : Trim30d / tripartite motif-containing 30D
  
Possible biological names infered from orthology : Q9C035 / TRIM5 / tripartite motif containing 5
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: E3
Gene start: 104470014
Gene end: 104507849
  
Corresponding Affymetrix probe sets: 10566366 (MoGene1.0st)   1435665_at (Mouse Genome 430 2.0 Array)   1438716_at (Mouse Genome 430 2.0 Array)   1456494_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000033211
Ensembl peptide - ENSMUSP00000065020
Ensembl peptide - ENSMUSP00000115684
NCBI entrez gene - 209387     See in Manteia.
MGI - MGI:3035181
RefSeq - XM_006507549
RefSeq - NM_001167828
RefSeq - NM_199146
RefSeq - XM_006507546
RefSeq - XM_006507547
RefSeq - XM_006507548
RefSeq Peptide - NP_001161300
RefSeq Peptide - NP_954597
swissprot - F6SX36
swissprot - Q3TNW3
swissprot - E9PWL0
Ensembl - ENSMUSG00000057596
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM5ENSG00000132256Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P15533 / Trim30a / Mus musculus tripartite motif-containing 30A (Trim30a), transcript variant 2, mRNA. / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000003092182
Trim30c / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000007861674
Trim12c / tripartite motif-containing 12C / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000005714353
Trim5 / Q9C035* / tripartite motif containing 5*ENSMUSG0000006044153
Trim6 / Q8BGE7 / Tripartite motif-containing protein 6 / Q9C030* / tripartite motif containing 6*ENSMUSG0000007224441
Trim34a / tripartite motif-containing 34A / TRIM34* / Q9BYJ4* / TRIM6-TRIM34* / TRIM6-TRIM34 readthrough* / tripartite motif containing 34*ENSMUSG0000005614439
Trim34b / TRIM34* / Q9BYJ4* / TRIM6-TRIM34* / TRIM6-TRIM34 readthrough* / tripartite motif containing 34*ENSMUSG0000009021538
Trim21 / tripartite motif-containing 21 / P19474*ENSMUSG0000003096632
Q99PQ1 / Trim12a / Tripartite motif-containing protein 12A / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000006625831
Trim68 / tripartite motif-containing 68 / Q6AZZ1*ENSMUSG0000007396829
Q99PQ2 / Trim11 / E3 ubiquitin-protein ligase TRIM11 / Q96F44* / tripartite motif containing 11*ENSMUSG0000002045527
Trim39 / tripartite motif-containing 39 / Q9HCM9* / TRIM39-RPP21* / TRIM39-RPP21 readthrough*ENSMUSG0000004540927
Q7TPM3 / Trim17 / E3 ubiquitin-protein ligase TRIM17 / Q9Y577* / tripartite motif containing 17*ENSMUSG0000003696426
Trim38 / tripartite motif-containing 38 / O00635*ENSMUSG0000006414026
Q5NCC9 / Trim58 / tripartite motif-containing 58 / Q8NG06*ENSMUSG0000003712425
Q3UWZ0 / Trim75 / tripartite motif-containing 75 / A6NK02* / TRIM75P* / tripartite motif containing 75, pseudogene*ENSMUSG0000007108924
Q8VI40 / Trim60 / tripartite motif-containing 60 / Q495X7*ENSMUSG0000005349022
Trim61 / tripartite motif-containing 61ENSMUSG0000010971819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR032917  Tripartite motif-containing protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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