ENSMUSG00000078616


Mus musculus

Features
Gene ID: ENSMUSG00000078616
  
Biological name :Trim30c
  
Synonyms : Trim30c
  
Possible biological names infered from orthology : Q9C035 / TRIM5 / tripartite motif containing 5
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: E3
Gene start: 104382065
Gene end: 104400837
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSMUSP00000102441
MGI - MGI:4821257
swissprot - D3YVI9
Ensembl - ENSMUSG00000078616
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM5ENSG00000132256Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Trim30d / tripartite motif-containing 30D / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000005759672
P15533 / Trim30a / Mus musculus tripartite motif-containing 30A (Trim30a), transcript variant 2, mRNA. / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000003092170
Trim12c / tripartite motif-containing 12C / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000005714352
Trim5 / Q9C035* / tripartite motif containing 5*ENSMUSG0000006044152
Trim6 / Q8BGE7 / Tripartite motif-containing protein 6 / Q9C030* / tripartite motif containing 6*ENSMUSG0000007224441
Trim34a / tripartite motif-containing 34A / TRIM34* / Q9BYJ4* / TRIM6-TRIM34* / TRIM6-TRIM34 readthrough* / tripartite motif containing 34*ENSMUSG0000005614437
Trim34b / TRIM34* / Q9BYJ4* / TRIM6-TRIM34* / TRIM6-TRIM34 readthrough* / tripartite motif containing 34*ENSMUSG0000009021537
Trim21 / tripartite motif-containing 21 / P19474*ENSMUSG0000003096630
Q99PQ1 / Trim12a / Tripartite motif-containing protein 12A / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000006625830
Q99PQ2 / Trim11 / E3 ubiquitin-protein ligase TRIM11 / Q96F44* / tripartite motif containing 11*ENSMUSG0000002045528
Trim68 / tripartite motif-containing 68 / Q6AZZ1*ENSMUSG0000007396828
Trim39 / tripartite motif-containing 39 / Q9HCM9* / TRIM39-RPP21* / TRIM39-RPP21 readthrough*ENSMUSG0000004540925
Trim38 / tripartite motif-containing 38 / O00635*ENSMUSG0000006414025
Q3UWZ0 / Trim75 / tripartite motif-containing 75 / A6NK02* / TRIM75P* / tripartite motif containing 75, pseudogene*ENSMUSG0000007108925
Q7TPM3 / Trim17 / E3 ubiquitin-protein ligase TRIM17 / Q9Y577* / tripartite motif containing 17*ENSMUSG0000003696424
Q5NCC9 / Trim58 / tripartite motif-containing 58 / Q8NG06*ENSMUSG0000003712424
Q8VI40 / Trim60 / tripartite motif-containing 60 / Q495X7*ENSMUSG0000005349021
Trim61 / tripartite motif-containing 61ENSMUSG0000010971820


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032917  Tripartite motif-containing protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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