ENSMUSG00000045409


Mus musculus

Features
Gene ID: ENSMUSG00000045409
  
Biological name :Trim39
  
Synonyms : Trim39 / tripartite motif-containing 39
  
Possible biological names infered from orthology : Q9HCM9 / TRIM39-RPP21 / TRIM39-RPP21 readthrough
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: B1
Gene start: 36258873
Gene end: 36272247
  
Corresponding Affymetrix probe sets: 10450752 (MoGene1.0st)   1418851_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000039790
Ensembl peptide - ENSMUSP00000109336
Ensembl peptide - ENSMUSP00000133298
Ensembl peptide - ENSMUSP00000133529
NCBI entrez gene - 79263     See in Manteia.
MGI - MGI:1890659
RefSeq - XM_006525171
RefSeq - NM_024468
RefSeq - NM_178281
RefSeq Peptide - NP_840065
RefSeq Peptide - NP_077788
swissprot - E9QLN4
swissprot - G3UX29
swissprot - G3UWI0
Ensembl - ENSMUSG00000045409
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038146Gallus gallus
 Q9HCM9ENSG00000204599Homo sapiens
 TRIM39-RPP21ENSG00000248167Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q99PQ2 / Trim11 / E3 ubiquitin-protein ligase TRIM11 / Q96F44* / tripartite motif containing 11*ENSMUSG0000002045541
Q5NCC9 / Trim58 / tripartite motif-containing 58 / Q8NG06*ENSMUSG0000003712439
Trim21 / tripartite motif-containing 21 / P19474*ENSMUSG0000003096636
Trim68 / tripartite motif-containing 68 / Q6AZZ1*ENSMUSG0000007396836
Q7TPM3 / Trim17 / E3 ubiquitin-protein ligase TRIM17 / Q9Y577* / tripartite motif containing 17*ENSMUSG0000003696435
Q3UWZ0 / Trim75 / tripartite motif-containing 75 / A6NK02* / TRIM75P* / tripartite motif containing 75, pseudogene*ENSMUSG0000007108934
Trim6 / Q8BGE7 / Tripartite motif-containing protein 6 / Q9C030* / tripartite motif containing 6*ENSMUSG0000007224433
Q8VI40 / Trim60 / tripartite motif-containing 60 / Q495X7*ENSMUSG0000005349032
Trim38 / tripartite motif-containing 38 / O00635*ENSMUSG0000006414032
Trim61 / tripartite motif-containing 61ENSMUSG0000010971831
Trim34a / tripartite motif-containing 34A / TRIM34* / Q9BYJ4* / TRIM6-TRIM34* / TRIM6-TRIM34 readthrough* / tripartite motif containing 34*ENSMUSG0000005614430
Trim34b / TRIM34* / Q9BYJ4* / TRIM6-TRIM34* / TRIM6-TRIM34 readthrough* / tripartite motif containing 34*ENSMUSG0000009021530
Trim5 / Q9C035* / tripartite motif containing 5*ENSMUSG0000006044128
P15533 / Trim30a / Mus musculus tripartite motif-containing 30A (Trim30a), transcript variant 2, mRNA. / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000003092127
Trim12c / tripartite motif-containing 12C / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000005714327
Trim30d / tripartite motif-containing 30D / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000005759627
Trim30c / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000007861626
Q99PQ1 / Trim12a / Tripartite motif-containing protein 12A / TRIM5* / Q9C035* / tripartite motif containing 5*ENSMUSG0000006625817


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR035033  TRIM39, PRY/SPRY domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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