ENSDARG00000002549


Danio rerio

Features
Gene ID: ENSDARG00000002549
  
Biological name :eif3eb
  
Synonyms : eif3eb / eukaryotic translation initiation factor 3, subunit E, b
  
Possible biological names infered from orthology : EIF3E / eukaryotic translation initiation factor 3 subunit E / P60228 / P60229
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 22622355
Gene end: 22664398
  
Corresponding Affymetrix probe sets: Dr.5119.1.A1_at (Zebrafish Array)   NM_001044951_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118894
Ensembl peptide - ENSDARP00000123842
Ensembl peptide - ENSDARP00000124720
Ensembl peptide - ENSDARP00000003276
Ensembl peptide - ENSDARP00000120794
NCBI entrez gene - 561049     See in Manteia.
RefSeq - NM_001044951
RefSeq Peptide - NP_001038416
swissprot - F8W2I2
swissprot - F1QHS3
swissprot - F8W4Y6
swissprot - T1ECV8
swissprot - Z4YIU6
ZFIN ID - ZDB-GENE-050208-283
Ensembl - ENSDARG00000002549
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EIF3EENSGALG00000037067Gallus gallus
 EIF3EENSG00000104408Homo sapiens
 Eif3eENSMUSG00000022336Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6DRI1 / eif3ea / eukaryotic translation initiation factor 3, subunit E, a / EIF3E* / P60228* / P60229* / eukaryotic translation initiation factor 3 subunit E*ENSDARG0000009069791


Protein motifs (from Interpro)
Interpro ID Name
 IPR000717  Proteasome component (PCI) domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR016650  Eukaryotic translation initiation factor 3 subunit E
 IPR019010  Eukaryotic translation initiation factor 3 subunit E, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001732 formation of cytoplasmic translation initiation complex IEA
 biological_processGO:0002183 cytoplasmic translational initiation IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005852 eukaryotic translation initiation factor 3 complex IEA
 cellular_componentGO:0016282 eukaryotic 43S preinitiation complex IEA
 cellular_componentGO:0033290 eukaryotic 48S preinitiation complex IEA
 cellular_componentGO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e IEA
 molecular_functionGO:0003743 translation initiation factor activity IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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