ENSDARG00000002750


Danio rerio

Features
Gene ID: ENSDARG00000002750
  
Biological name :phf20a
  
Synonyms : PHD finger protein 20, a / phf20a
  
Possible biological names infered from orthology : PHD finger protein 20 / PHF20 / Q8BLG0 / Q9BVI0
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 25044082
Gene end: 25063586
  
Corresponding Affymetrix probe sets: Dr.19576.1.A1_at (Zebrafish Array)   XM_686696_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000111291
NCBI entrez gene - 563332     See in Manteia.
RefSeq - XM_021472492
RefSeq - XM_021479839
RefSeq - XM_009306052
RefSeq - XM_021479841
RefSeq - XM_686696
RefSeq - XM_021479840
swissprot - A8HAK1
ZFIN ID - ZDB-GENE-070912-270
Ensembl - ENSDARG00000002750
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF20ENSGALG00000001522Gallus gallus
 PHF20ENSG00000025293Homo sapiens
 Phf20ENSMUSG00000038116Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phf20b / PHD finger protein 20, b / PHF20* / Q8BLG0* / Q9BVI0* / PHD finger protein 20*ENSDARG0000003873741
phf20l1 / PHD finger protein 20 like 1 / A8MW92* / Q8CCJ9* / PHD finger protein 20-like protein 1 *ENSDARG0000001742731


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR002999  Tudor domain
 IPR004092  Mbt repeat
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0071339 MLL1 complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
HATs acetylate histones
Regulation of TP53 Degradation
Regulation of TP53 Activity through Association with Co-factors
Stabilization of p53


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000035559 tp53 / P79734 / tumor protein p53 / Trp53* / P04637* / P02340* / transformation related protein 53*  / complex / reaction






 

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