ENSDARG00000017427


Danio rerio

Features
Gene ID: ENSDARG00000017427
  
Biological name :phf20l1
  
Synonyms : PHD finger protein 20 like 1 / phf20l1
  
Possible biological names infered from orthology : A8MW92 / PHD finger protein 20-like protein 1 / Q8CCJ9
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 31601181
Gene end: 31622805
  
Corresponding Affymetrix probe sets: Dr.7293.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000022161
Ensembl peptide - ENSDARP00000144538
Ensembl peptide - ENSDARP00000118885
NCBI entrez gene - 327626     See in Manteia.
RefSeq - XM_009292481
swissprot - E9QHS8
swissprot - E7F8P3
swissprot - E7F2Q3
ZFIN ID - ZDB-GENE-030131-5837
Ensembl - ENSDARG00000017427
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF20L1ENSGALG00000033205Gallus gallus
 A8MW92ENSG00000129292Homo sapiens
 Q8CCJ9ENSMUSG00000072501Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phf20b / PHD finger protein 20, b / PHF20* / Q8BLG0* / Q9BVI0* / PHD finger protein 20*ENSDARG0000003873728
phf20a / PHD finger protein 20, a / PHF20* / Q8BLG0* / Q9BVI0* / PHD finger protein 20*ENSDARG0000000275026


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR002999  Tudor domain
 IPR004092  Mbt repeat
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR014002  Agenet domain, plant type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR022255  Domain of unknown function DUF3776


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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