ENSDARG00000003021


Danio rerio

Features
Gene ID: ENSDARG00000003021
  
Biological name :hdac8
  
Synonyms : hdac8 / histone deacetylase 8
  
Possible biological names infered from orthology : Q8VH37 / Q9BY41
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 51656099
Gene end: 51710015
  
Corresponding Affymetrix probe sets: Dr.3849.1.A1_at (Zebrafish Array)   NM_213431_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000120949
Ensembl peptide - ENSDARP00000143157
Ensembl peptide - ENSDARP00000017858
NCBI entrez gene - 406740     See in Manteia.
RefSeq - NM_213431
RefSeq - XM_005166507
RefSeq Peptide - NP_998596
swissprot - F1QAZ7
swissprot - A0A1L1QZN3
swissprot - F1R9J0
ZFIN ID - ZDB-GENE-040426-2772
Ensembl - ENSDARG00000003021
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HDAC8ENSGALG00000004825Gallus gallus
 HDAC8ENSG00000147099Homo sapiens
 Hdac8ENSMUSG00000067567Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hdac1 / histone deacetylase 1 / O09106* / Q13547* / Gm10093*ENSDARG0000001542744
hdac3 / histone deacetylase 3 / O15379*ENSDARG0000003751441
hdac11 / histone deacetylase 11 / Q96DB2*ENSDARG0000008757321
hdac12 / histone deacetylase 12ENSDARG0000010142218


Protein motifs (from Interpro)
Interpro ID Name
 IPR000286  Histone deacetylase family
 IPR003084  Histone deacetylase
 IPR023801  Histone deacetylase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016575 histone deacetylation IEA
 biological_processGO:0070932 histone H3 deacetylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0004407 histone deacetylase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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