ENSDARG00000003098


Danio rerio

Features
Gene ID: ENSDARG00000003098
  
Biological name :kdm5bb
  
Synonyms : kdm5bb / lysine (K)-specific demethylase 5Bb
  
Possible biological names infered from orthology : KDM5B / lysine demethylase 5B / Lysine-specific demethylase 5B / Q80Y84 / Q9UGL1
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 28305213
Gene end: 28342487
  
Corresponding Affymetrix probe sets: Dr.11022.1.A1_at (Zebrafish Array)   NM_001002166_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124925
Ensembl peptide - ENSDARP00000124215
Ensembl peptide - ENSDARP00000124652
Ensembl peptide - ENSDARP00000102232
Ensembl peptide - ENSDARP00000023794
NCBI entrez gene - 415256     See in Manteia.
RefSeq - NM_001002166
RefSeq Peptide - NP_001002166
swissprot - F8W2P8
swissprot - F1QXN4
swissprot - F8W4E5
swissprot - F8W5Z2
swissprot - G1K2I1
ZFIN ID - ZDB-GENE-030424-1
Ensembl - ENSDARG00000003098
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM5BENSGALG00000038948Gallus gallus
 KDM5BENSG00000117139Homo sapiens
 Kdm5bENSMUSG00000042207Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm5ba / lysine (K)-specific demethylase 5Ba / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000005709361
kdm5c / lysine (K)-specific demethylase 5C / KDM5D* / Q9BY66* / P41229* / P41230* / Q62240* / lysine demethylase 5C* / lysine demethylase 5D* / Lysine-specific demethylase 5C * / Lysine-spe...ENSDARG0000000612443
Q1LVC2 / jarid2b / jumonji, AT rich interactive domain 2b / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006226812
jarid2a / jumonji, AT rich interactive domain 2a / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006092511


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR001965  Zinc finger, PHD-type
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR004198  Zinc finger, C5HC2-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013637  Lysine-specific demethylase-like domain
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
TFAP2 (AP-2) family regulates transcription of cell cycle factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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