ENSDARG00000060925


Danio rerio

Features
Gene ID: ENSDARG00000060925
  
Biological name :jarid2a
  
Synonyms : jarid2a / jumonji, AT rich interactive domain 2a
  
Possible biological names infered from orthology : JARID2 / jumonji and AT-rich interaction domain containing 2 / Protein Jumonji / Q62315 / Q92833
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 25407021
Gene end: 25500729
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000080768
Ensembl peptide - ENSDARP00000151217
NCBI entrez gene - 100007426     See in Manteia.
RefSeq - XM_001345849
swissprot - E7F6J7
ZFIN ID - ZDB-GENE-061218-1
Ensembl - ENSDARG00000060925
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 JARID2ENSGALG00000012702Gallus gallus
 JARID2ENSG00000008083Homo sapiens
 Jarid2ENSMUSG00000038518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q1LVC2 / jarid2b / jumonji, AT rich interactive domain 2b / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006226857
kdm5c / lysine (K)-specific demethylase 5C / KDM5D* / Q9BY66* / P41229* / P41230* / Q62240* / lysine demethylase 5C* / lysine demethylase 5D* / Lysine-specific demethylase 5C * / Lysine-spe...ENSDARG0000000612415
kdm5bb / lysine (K)-specific demethylase 5Bb / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000000309815
kdm5ba / lysine (K)-specific demethylase 5Ba / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000005709315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR004198  Zinc finger, C5HC2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000098924 suz12b / B0R1D5 / SUZ12 polycomb repressive complex 2b subunit / SUZ12* / Q80U70* / Q15022* / Polycomb protein Suz12 * / SUZ12 polycomb repressive complex 2 subunit*  / complex
 ENSDARG00000099640 eed / Q566T0 / embryonic ectoderm development / O75530* / Q921E6* / Polycomb protein EED *  / complex






 

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