ENSGALG00000012702


Gallus gallus

Features
Gene ID: ENSGALG00000012702
  
Biological name :JARID2
  
Synonyms : JARID2 / protein Jumonji
  
Possible biological names infered from orthology : jumonji and AT-rich interaction domain containing 2 / Q62315 / Q92833
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 61265832
Gene end: 61471268
  
Corresponding Affymetrix probe sets: Gga.12117.1.S1_at (Chicken Array)   GgaAffx.8053.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020711
NCBI entrez gene - 420839     See in Manteia.
RefSeq - NM_001012862
RefSeq - XM_015275874
RefSeq Peptide - NP_001012880
swissprot - F1NWZ0
Ensembl - ENSGALG00000012702
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 jarid2aENSDARG00000060925Danio rerio
 Q1LVC2ENSDARG00000062268Danio rerio
 JARID2ENSG00000008083Homo sapiens
 Jarid2ENSMUSG00000038518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KDM5B / Q5F3R2 / Lysine-specific demethylase 5B / Q80Y84* / Q9UGL1* / lysine demethylase 5B*ENSGALG0000003894815
KDM5A / lysine demethylase 5A / P29375* / Q3UXZ9* / Lysine-specific demethylase 5A *ENSGALG0000001298615


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR004198  Zinc finger, C5HC2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0031061 negative regulation of histone methylation IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0051574 positive regulation of histone H3-K9 methylation IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0035097 histone methyltransferase complex IEA
 cellular_componentGO:0035098 ESC/E(Z) complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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