ENSDARG00000003910


Danio rerio

Features
Gene ID: ENSDARG00000003910
  
Biological name :med13b
  
Synonyms : med13b / mediator complex subunit 13b
  
Possible biological names infered from orthology : MED13 / mediator complex subunit 13 / Mediator of RNA polymerase II transcription subunit 13 / Q5SWW4 / Q9UHV7
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 20060643
Gene end: 20125331
  
Corresponding Affymetrix probe sets: Dr.2167.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000126727
NCBI entrez gene - 564707     See in Manteia.
RefSeq - NM_001083838
RefSeq Peptide - NP_001077307
swissprot - R4GE16
ZFIN ID - ZDB-GENE-030131-3529
Ensembl - ENSDARG00000003910
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MED13ENSGALG00000005230Gallus gallus
 MED13ENSG00000108510Homo sapiens
 Med13ENSMUSG00000034297Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
med13a / mediator complex subunit 13a / MED13* / Q5SWW4* / Q9UHV7* / mediator complex subunit 13* / Mediator of RNA polymerase II transcription subunit 13 *ENSDARG0000005388470


Protein motifs (from Interpro)
Interpro ID Name
 IPR009401  Mediator complex, subunit Med13
 IPR021643  Mediator complex, subunit Med13, N-terminal, metazoa/fungi


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016592 mediator complex IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000032 hypothalamus hypothalamus decreased amount , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary increased amount , abnormal
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 ZFA:0000048 olfactory placode olfactory placode increased amount , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000101 diencephalon diencephalon increased amount , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000304 ventral telencephalon ventral telencephalon decreased amount , abnormal
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 ZFA:0000445 optic tectum optic tectum decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis increased curvature , abnormal
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 ZFA:0001114 head head hypoplastic , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage deformed , abnormal
ceratohyal cartilage mislocalised posteriorly , abnormal
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 ZFA:0009003 cranial neural crest cell cranial neural crest cell mislocalised , abnormal
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 ZFA:0009052 motor neuron motor neuron increased amount , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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