ENSDARG00000053884


Danio rerio

Features
Gene ID: ENSDARG00000053884
  
Biological name :med13a
  
Synonyms : med13a / mediator complex subunit 13a
  
Possible biological names infered from orthology : MED13 / mediator complex subunit 13 / Mediator of RNA polymerase II transcription subunit 13 / Q5SWW4 / Q9UHV7
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 28029578
Gene end: 28118035
  
Corresponding Affymetrix probe sets: Dr.13644.1.S1_at (Zebrafish Array)   Dr.13644.2.S1_at (Zebrafish Array)   Dr.16493.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000083285
Ensembl peptide - ENSDARP00000119911
Ensembl peptide - ENSDARP00000152677
NCBI entrez gene - 100004024     See in Manteia.
swissprot - E7FCQ8
swissprot - E9QD13
ZFIN ID - ZDB-GENE-070627-13
Ensembl - ENSDARG00000053884
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MED13ENSGALG00000005230Gallus gallus
 MED13ENSG00000108510Homo sapiens
 Med13ENSMUSG00000034297Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
med13b / mediator complex subunit 13b / MED13* / Q5SWW4* / Q9UHV7* / mediator complex subunit 13* / Mediator of RNA polymerase II transcription subunit 13 *ENSDARG0000000391067


Protein motifs (from Interpro)
Interpro ID Name
 IPR009401  Mediator complex, subunit Med13
 IPR021643  Mediator complex, subunit Med13, N-terminal, metazoa/fungi


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016592 mediator complex IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000077 tail bud tail bud mislocalised , abnormal
tail bud multiple , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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