ENSDARG00000005026


Danio rerio

Features
Gene ID: ENSDARG00000005026
  
Biological name :tshz1
  
Synonyms : B3DJM5 / teashirt zinc finger homeobox 1 / tshz1
  
Possible biological names infered from orthology : Q5DTH5 / Q6ZSZ6 / Teashirt homolog 1
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 21266008
Gene end: 21416407
  
Corresponding Affymetrix probe sets: Dr.16111.1.A1_at (Zebrafish Array)   Dr.16111.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000105499
Ensembl peptide - ENSDARP00000148441
Ensembl peptide - ENSDARP00000023365
NCBI entrez gene - 369196     See in Manteia.
RefSeq - NM_001042746
RefSeq Peptide - NP_001036211
swissprot - B3DJM5
swissprot - F6NU84
ZFIN ID - ZDB-GENE-030820-3
Ensembl - ENSDARG00000005026
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSHZ1ENSGALG00000013672Gallus gallus
 TSHZ1ENSG00000179981Homo sapiens
 Tshz1ENSMUSG00000046982Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tshz3b / teashirt zinc finger homeobox 3b / TSHZ3* / Q63HK5* / teashirt zinc finger homeobox 3*ENSDARG0000010336146
tshz2 / teashirt zinc finger homeobox 2 / Q9NRE2*ENSDARG0000007920138
tshz3a / teashirt zinc finger homeobox 3a / TSHZ3* / Q63HK5* / teashirt zinc finger homeobox 3*ENSDARG0000008739435


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR013087  Zinc finger C2H2-type
 IPR026808  Teashirt homologue 1
 IPR027008  Teashirt family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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