ENSDARG00000079201


Danio rerio

Features
Gene ID: ENSDARG00000079201
  
Biological name :tshz2
  
Synonyms : teashirt zinc finger homeobox 2 / tshz2
  
Possible biological names infered from orthology : Q68FE9 / Q9NRE2 / teashirt zinc finger family member 2
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 38379627
Gene end: 38497705
  
Corresponding Affymetrix probe sets: Dr.13421.1.S1_at (Zebrafish Array)   Dr.16418.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000097577
NCBI entrez gene - 100332862     See in Manteia.
swissprot - F1QV43
ZFIN ID - ZDB-GENE-100322-2
Ensembl - ENSDARG00000079201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSHZ2ENSGALG00000007809Gallus gallus
 TSHZ2ENSG00000182463Homo sapiens
 Tshz2ENSMUSG00000047907Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tshz3b / teashirt zinc finger homeobox 3b / TSHZ3* / Q63HK5* / teashirt zinc finger homeobox 3*ENSDARG0000010336145
tshz1 / B3DJM5 / teashirt zinc finger homeobox 1 / Q6ZSZ6* / Q5DTH5* / Teashirt homolog 1 *ENSDARG0000000502643
tshz3a / teashirt zinc finger homeobox 3a / TSHZ3* / Q63HK5* / teashirt zinc finger homeobox 3*ENSDARG0000008739435


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR027008  Teashirt family
 IPR027010  Teashirt homologue 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001114 head head anterior side collapsed , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage malformed , abnormal
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 ZFA:0001321 neurocranial trabecula neurocranial trabecula fused with neurocranial trabecula , abnormal
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 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage malformed , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage inverted , abnormal
ceratohyal cartilage flattened , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
ethmoid cartilage decreased size , abnormal
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 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage malformed , abnormal
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 ZFA:0001458 cranial cartilage cranial cartilage absent , abnormal
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 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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