ENSDARG00000005927


Danio rerio

Features
Gene ID: ENSDARG00000005927
  
Biological name :tbc1d17
  
Synonyms : tbc1d17 / TBC1 domain family, member 17
  
Possible biological names infered from orthology : Q8BYH7 / Q9HA65
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 30166946
Gene end: 30186298
  
Corresponding Affymetrix probe sets: Dr.7418.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000123338
Ensembl peptide - ENSDARP00000020784
Ensembl peptide - ENSDARP00000071525
NCBI entrez gene - 554092     See in Manteia.
RefSeq - NM_001024394
RefSeq - XM_005163947
RefSeq Peptide - NP_001019565
swissprot - F1QM41
swissprot - F1Q5A4
swissprot - F1QXN6
ZFIN ID - ZDB-GENE-050522-79
Ensembl - ENSDARG00000005927
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9HA65ENSG00000104946Homo sapiens
 Q8BYH7ENSMUSG00000038520Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d15 / TBC1 domain family, member 15 / Q8TC07* / Q9CXF4*ENSDARG0000005721846
tbc1d16 / TBC1 domain family, member 16 / Q8TBP0* / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA.*ENSDARG0000003699424
sgsm2 / small G protein signaling modulator 2 / O43147* / Q80U12*ENSDARG0000006330722
tbc1d25 / TBC1 domain family, member 25 / A1A5B6* / Q3MII6*ENSDARG0000007533321
sgsm1a / small G protein signaling modulator 1a / SGSM1* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000002885721
sgsm1b / small G protein signaling modulator 1b / SGSM1* / Q8BPQ7* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000007537621
si:dkey-238d18.4ENSDARG0000008897214


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR021935  Domain of unknown function DUF3548


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000068628 rab8b / RAB8B, member RAS oncogene family / P61028* / Q92930*  / complex / reaction
 ENSDARG00000067920 rab8a / RAB8A, member RAS oncogene family / P55258* / P61006*  / reaction / complex






 

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