ENSDARG00000028857


Danio rerio

Features
Gene ID: ENSDARG00000028857
  
Biological name :sgsm1a
  
Synonyms : sgsm1a / small G protein signaling modulator 1a
  
Possible biological names infered from orthology : Q2NKQ1 / Q8BPQ7 / SGSM1 / small G protein signaling modulator 1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 20030414
Gene end: 20093196
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000047840
Ensembl peptide - ENSDARP00000145107
Ensembl peptide - ENSDARP00000146355
Ensembl peptide - ENSDARP00000149588
swissprot - F1QP87
ZFIN ID - ZDB-GENE-060526-379
Ensembl - ENSDARG00000028857
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SGSM1ENSGALG00000005379Gallus gallus
 SGSM1ENSG00000167037Homo sapiens
 Sgsm1ENSMUSG00000042216Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sgsm1b / small G protein signaling modulator 1b / SGSM1* / Q8BPQ7* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000007537667
sgsm2 / small G protein signaling modulator 2 / O43147* / Q80U12*ENSDARG0000006330756
tbc1d17 / TBC1 domain family, member 17 / Q8BYH7* / Q9HA65*ENSDARG0000000592713
tbc1d16 / TBC1 domain family, member 16 / Q8TBP0* / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA.*ENSDARG0000003699412
tbc1d15 / TBC1 domain family, member 15 / Q8TC07* / Q9CXF4*ENSDARG0000005721812
tbc1d25 / TBC1 domain family, member 25 / A1A5B6* / Q3MII6*ENSDARG0000007533312
si:dkey-238d18.4ENSDARG000000889728


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR004012  RUN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr