ENSDARG00000006192


Danio rerio

Features
Gene ID: ENSDARG00000006192
  
Biological name :gatad2ab
  
Synonyms : gatad2ab / GATA zinc finger domain containing 2Ab
  
Possible biological names infered from orthology : GATAD2A / GATA zinc finger domain containing 2A / Q86YP4 / Q8CHY6 / Transcriptional repressor p66 alpha
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 18315490
Gene end: 18387919
  
Corresponding Affymetrix probe sets: Dr.379.1.A1_at (Zebrafish Array)   NM_212916_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000150981
Ensembl peptide - ENSDARP00000157328
Ensembl peptide - ENSDARP00000031168
Ensembl peptide - ENSDARP00000115930
Ensembl peptide - ENSDARP00000135963
Ensembl peptide - ENSDARP00000147496
NCBI entrez gene - 405852     See in Manteia.
RefSeq - NM_212916
RefSeq Peptide - NP_998081
swissprot - A0A0R4IN87
swissprot - Q1LVH9
swissprot - Q1LVI0
ZFIN ID - ZDB-GENE-040426-2372
Ensembl - ENSDARG00000006192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GATAD2AENSGALG00000042900Gallus gallus
 Q86YP4ENSG00000167491Homo sapiens
 Q8CHY6ENSMUSG00000036180Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gatad2b / GATA zinc finger domain containing 2B / Q8VHR5* / Q8WXI9* / Transcriptional repressor p66-beta *ENSDARG0000000583438


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR006612  THAP-type zinc finger
 IPR013088  Zinc finger, NHR/GATA-type
 IPR032346  Transcriptional repressor p66, coiled-coil MBD2-interaction domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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