ENSDARG00000007196


Danio rerio

Features
Gene ID: ENSDARG00000007196
  
Biological name :rae1
  
Synonyms : Q7ZWF0 / rae1 / ribonucleic acid export 1
  
Possible biological names infered from orthology : mRNA export factor / P78406 / Q8C570
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22326624
Gene end: 22334059
  
Corresponding Affymetrix probe sets: Dr.140.2.A1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000015105
NCBI entrez gene - 393973     See in Manteia.
RefSeq - NM_200998
RefSeq Peptide - NP_957292
swissprot - Q7ZWF0
ZFIN ID - ZDB-GENE-040426-1029
Ensembl - ENSDARG00000007196
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAE1ENSGALG00000007653Gallus gallus
 RAE1ENSG00000101146Homo sapiens
 Rae1ENSMUSG00000027509Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bub3 / BUB3 mitotic checkpoint protein / O43684* / Q9WVA3* / Mitotic checkpoint protein BUB3 *ENSDARG0000007588331


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IBA
 biological_processGO:0006405 RNA export from nucleus IBA
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0060236 regulation of mitotic spindle organization ISS
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005643 nuclear pore IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0097431 mitotic spindle pole ISS
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0043130 ubiquitin binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk increased size , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000140 pancreas pancreas absent , abnormal
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 ZFA:0001114 head head malformed , abnormal
head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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