ENSMUSG00000027509


Mus musculus

Features
Gene ID: ENSMUSG00000027509
  
Biological name :Rae1
  
Synonyms : mRNA export factor / Q8C570 / Rae1
  
Possible biological names infered from orthology : P78406 / ribonucleic acid export 1
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H3
Gene start: 173000117
Gene end: 173015739
  
Corresponding Affymetrix probe sets: 10479026 (MoGene1.0st)   1429528_at (Mouse Genome 430 2.0 Array)   1444256_at (Mouse Genome 430 2.0 Array)   1459822_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000029013
Ensembl peptide - ENSMUSP00000121815
NCBI entrez gene - 66679     See in Manteia.
MGI - MGI:1913929
RefSeq - XM_006500024
RefSeq - NM_175112
RefSeq - XM_006500023
RefSeq Peptide - NP_780321
swissprot - Q8C570
swissprot - A2ASC6
Ensembl - ENSMUSG00000027509
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rae1ENSDARG00000007196Danio rerio
 RAE1ENSGALG00000007653Gallus gallus
 RAE1ENSG00000101146Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Bub3 / Q9WVA3 / Mitotic checkpoint protein BUB3 / O43684* / BUB3, mitotic checkpoint protein*ENSMUSG0000006697931


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IBA
 biological_processGO:0006405 RNA export from nucleus IBA
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0060236 regulation of mitotic spindle organization IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IDA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0097431 mitotic spindle pole IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0043130 ubiquitin binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
Regulation of HSF1-mediated heat shock response
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000160 kyphosis "forward curvature of the spine, characterized by extensive flexion. " [J:62023, J:66943, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, cml:Cathleen M. Lutz , Mouse Genome Informatics Curator]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0000162 lordosis "anteriorly convex curvature of the spine, "saddle back" " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:62022]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0000352 decreased cell proliferation "less than the normal growth and reproduction of similar cells" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0000749 muscle degeneration "pathological deterioration of muscle tissue, often accompanied by loss of function" [csmith:Cynthia L. Smith, Mouse Genome Informatics Curator]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0001244 thin dermal layer "reduced thickness of the dermis" [J:65030]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0001263 weight loss "progressive reduction of body weight below normal average for age" [J:45400]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0001304 cataracts "complete or partial opacity of the lens" [J:65031]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0002269 muscular atrophy "a wasting of muscle tissue resulting in a derangement of the muscle fibers; occurs with age, immobilization, weightlessness, malnutrition or denervation" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, cml:Cathleen M. Lutz , Mouse Genome Informatics Curator]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0003786 premature aging "earlier than normal occurence of the normal signs of aging" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:97764]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0004024 aneuploidy "chromosome count is not an exact multiple of the haploid number " [llw2:Linda Washburn , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0004045 abnormal cell cycle checkpoint function "anomaly in the amount of time spent at the points in the cell cycle (end of G1 phase, end of G2 phase, and during metaphase) which prevent the cell from progressing to the next phase when conditions are unfavorable" [smb:Susan M Bello, Mouse Genome Informatics Curator]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0004046 abnormal mitosis "anomaly in the process of cell division including both division of the nucleus (karyokinesis) and the cytoplasm (cytokinesis) " [smb:Susan M Bello, Mouse Genome Informatics Curator]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0004499 increased incidence of chemically-induced tumors "higher than normal frequency of tumor incidence induced by one or more chemical carcinogens or mutagens" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0004965 inner cell mass degeneration 
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0005150 cachexia "general weight loss and wasting occurring in the course of chronic disease" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

 MP:0008007 abnormal cellular replicative senescence "anomaly in the process in which a cell progresses from its inception to the end of its lifespan, which occurs as the cell continues cycles of growth and division" [GO:0001302, MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
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Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0008844 decreased subcutaneous adipose tissue amount "reduction in amount of adipose tissue beneath the skin" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0010025 decreased total body fat amount "less than the normal total amount of connective tissue composed of fat cells within the entire body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Bub3tm1Jvd/Bub3+,Rae1tm1Jvd/Rae1+
Genetic Background: Not Specified

 MP:0011096 complete embryonic lethality before somite formation "death of all organisms of a given genotype in a population between the point of implantation and somite formation (Mus: E4.5 to less than E8)" [MGI:csmith]
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Allelic Composition: Bub3tm1Jvd/Bub3tm1Jvd
Genetic Background: Not Specified

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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