ENSGALG00000007653


Gallus gallus

Features
Gene ID: ENSGALG00000007653
  
Biological name :RAE1
  
Synonyms : RAE1 / ribonucleic acid export 1
  
Possible biological names infered from orthology : mRNA export factor / P78406 / Q8C570
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 11846788
Gene end: 11855435
  
Corresponding Affymetrix probe sets: GgaAffx.12629.1.S1_s_at (Chicken Array)   GgaAffx.22314.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012383
Ensembl peptide - ENSGALP00000063448
Ensembl peptide - ENSGALP00000045718
NCBI entrez gene - 419324     See in Manteia.
RefSeq - XM_015296408
RefSeq - XM_015296410
RefSeq - NM_001030868
RefSeq - XM_015296409
RefSeq Peptide - NP_001026039
swissprot - E1C7F8
swissprot - A0A1L1RX84
Ensembl - ENSGALG00000007653
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rae1ENSDARG00000007196Danio rerio
 RAE1ENSG00000101146Homo sapiens
 Rae1ENSMUSG00000027509Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BUB3 / BUB3, mitotic checkpoint protein / O43684* / Q9WVA3* / Mitotic checkpoint protein BUB3 *ENSGALG0000000968132


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IBA
 biological_processGO:0006405 RNA export from nucleus IBA
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0060236 regulation of mitotic spindle organization IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005643 nuclear pore IBA
 cellular_componentGO:0097431 mitotic spindle pole IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0043130 ubiquitin binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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