ENSDARG00000007216


Danio rerio

Features
Gene ID: ENSDARG00000007216
  
Biological name :abce1
  
Synonyms : abce1 / ATP-binding cassette, sub-family E (OABP), member 1
  
Possible biological names infered from orthology : ATP binding cassette subfamily E member 1 / P61221 / P61222
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 43695036
Gene end: 43718067
  
Corresponding Affymetrix probe sets: Dr.1943.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000011642
Ensembl peptide - ENSDARP00000156268
NCBI entrez gene - 406324     See in Manteia.
swissprot - Q6TNW3
ZFIN ID - ZDB-GENE-040426-1995
Ensembl - ENSDARG00000007216
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCE1ENSGALG00000009961Gallus gallus
 ABCE1ENSG00000164163Homo sapiens
 Abce1ENSMUSG00000058355Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR007209  RNase L inhibitor RLI, possible metal-binding domain
 IPR013283  RLI1
 IPR017871  ABC transporter, conserved site
 IPR017896  4Fe-4S ferredoxin-type, iron-sulphur binding domain
 IPR017900  4Fe-4S ferredoxin, iron-sulphur binding, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR034348  RLI, domain 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000054 ribosomal subunit export from nucleus IBA
 biological_processGO:0006413 translational initiation IBA
 biological_processGO:0006415 translational termination IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005852 eukaryotic translation initiation factor 3 complex IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005506 iron ion binding IBA
 molecular_functionGO:0005524 ATP binding IBA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0043024 ribosomal small subunit binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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