ENSDARG00000007943


Danio rerio

Features
Gene ID: ENSDARG00000007943
  
Biological name :gabpb2a
  
Synonyms : GA binding protein transcription factor, beta subunit 2a / gabpb2a
  
Possible biological names infered from orthology : GA-binding protein subunit beta-2 / GA binding protein transcription factor beta subunit 2 / GABPB2 / P81069 / Q8TAK5
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 7432710
Gene end: 7441948
  
Corresponding Affymetrix probe sets: Dr.16630.1.S1_at (Zebrafish Array)   Dr.6925.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000027821
Ensembl peptide - ENSDARP00000138618
NCBI entrez gene - 554849     See in Manteia.
RefSeq - NM_001099977
RefSeq Peptide - NP_001093447
swissprot - A3KQS6
swissprot - A0A0R4IR63
ZFIN ID - ZDB-GENE-030131-5733
Ensembl - ENSDARG00000007943
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GABPB2ENSGALG00000026734Gallus gallus
 GABPB2ENSG00000143458Homo sapiens
 Gabpb2ENSMUSG00000038766Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gabpb2b / GA binding protein transcription factor, beta subunit 2b / Q8TAK5* / GABPB2* / P81069* / GA-binding protein subunit beta-2 * / GA binding protein transcription factor beta subunit 2*ENSDARG0000005434459
gabpb1 / GA binding protein transcription factor, beta subunit 1 / Q00420* / Q06547* / GA-binding protein subunit beta-1 *ENSDARG0000002365948
ankrd39 / ankyrin repeat domain 39 / Q53RE8* / Q9D2X0* / Ankyrin repeat domain-containing protein 39 *ENSDARG0000004135011


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr