ENSDARG00000054344


Danio rerio

Features
Gene ID: ENSDARG00000054344
  
Biological name :gabpb2b
  
Synonyms : GA binding protein transcription factor, beta subunit 2b / gabpb2b
  
Possible biological names infered from orthology : GA-binding protein subunit beta-2 / GA binding protein transcription factor beta subunit 2 / GABPB2 / P81069 / Q8TAK5
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 38337783
Gene end: 38347556
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119865
Ensembl peptide - ENSDARP00000071000
Ensembl peptide - ENSDARP00000117695
NCBI entrez gene - 561215     See in Manteia.
RefSeq - NM_001077152
RefSeq - XM_005158218
RefSeq Peptide - NP_001070620
swissprot - Q0D273
swissprot - A8DZD6
ZFIN ID - ZDB-GENE-050208-136
Ensembl - ENSDARG00000054344
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GABPB2ENSGALG00000026734Gallus gallus
 GABPB2ENSG00000143458Homo sapiens
 Gabpb2ENSMUSG00000038766Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gabpb2a / GA binding protein transcription factor, beta subunit 2a / Q8TAK5* / GABPB2* / P81069* / GA-binding protein subunit beta-2 * / GA binding protein transcription factor beta subunit 2*ENSDARG0000000794357
gabpb1 / GA binding protein transcription factor, beta subunit 1 / Q00420* / Q06547* / GA-binding protein subunit beta-1 *ENSDARG0000002365945
ankrd39 / ankyrin repeat domain 39 / Q53RE8* / Q9D2X0* / Ankyrin repeat domain-containing protein 39 *ENSDARG0000004135011


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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