ENSDARG00000008255


Danio rerio

Features
Gene ID: ENSDARG00000008255
  
Biological name :cnot6a
  
Synonyms : CCR4-NOT transcription complex, subunit 6a / cnot6a
  
Possible biological names infered from orthology : CCR4-NOT transcription complex subunit 6 / CNOT6 / Q8K3P5 / Q9ULM6
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 32757601
Gene end: 32781612
  
Corresponding Affymetrix probe sets: Dr.1968.1.S1_at (Zebrafish Array)   Dr.24978.1.S1_at (Zebrafish Array)   NM_212660_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000032583
NCBI entrez gene - 324048     See in Manteia.
RefSeq - NM_212660
RefSeq Peptide - NP_997825
swissprot - Q6PE30
ZFIN ID - ZDB-GENE-030131-2768
Ensembl - ENSDARG00000008255
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT6ENSGALG00000034316Gallus gallus
 CNOT6ENSG00000113300Homo sapiens
 Cnot6ENSMUSG00000020362Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnot6b / CCR4-NOT transcription complex, subunit 6b / CNOT6* / Q8K3P5* / Q9ULM6* / CCR4-NOT transcription complex subunit 6*ENSDARG0000010107286
A2BHJ4 / cnot6l / CCR4-NOT transcription complex, subunit 6-like / Q8VEG6* / Q96LI5*ENSDARG0000005459774
angel1 / angel homolog 1 (Drosophila) / 1 * / Q8VCU0* / Q9UNK9* / angel homolog 1*ENSDARG0000007756720
pde12 / phosphodiesterase 12 / Q3TIU4* / Q6L8Q7* / 2,5-phosphodiesterase 12 *ENSDARG0000003096420
angel2 / Q5RGT6 / angel homolog 2 (Drosophila) / Q5VTE6* / angel homolog 2*ENSDARG0000001674320
noctb / nocturnin b / NOCT* / Q9UK39* / nocturnin*ENSDARG0000007852517
nocta / nocturnin a / NOCT* / Q9UK39* / O35710* / nocturnin*ENSDARG0000007772616


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr