ENSDARG00000101072


Danio rerio

Features
Gene ID: ENSDARG00000101072
  
Biological name :cnot6b
  
Synonyms : CCR4-NOT transcription complex, subunit 6b / cnot6b
  
Possible biological names infered from orthology : CCR4-NOT transcription complex subunit 6 / CNOT6 / Q8K3P5 / Q9ULM6
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 48734794
Gene end: 48765262
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131996
swissprot - A0A0R4IF89
ZFIN ID - ZDB-GENE-071004-97
Ensembl - ENSDARG00000101072
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT6ENSGALG00000034316Gallus gallus
 CNOT6ENSG00000113300Homo sapiens
 Cnot6ENSMUSG00000020362Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnot6a / CCR4-NOT transcription complex, subunit 6a / CNOT6* / Q8K3P5* / Q9ULM6* / CCR4-NOT transcription complex subunit 6*ENSDARG0000000825585
A2BHJ4 / cnot6l / CCR4-NOT transcription complex, subunit 6-like / Q8VEG6* / Q96LI5*ENSDARG0000005459774
angel1 / angel homolog 1 (Drosophila) / 1 * / Q8VCU0* / Q9UNK9* / angel homolog 1*ENSDARG0000007756720
angel2 / Q5RGT6 / angel homolog 2 (Drosophila) / Q5VTE6* / angel homolog 2*ENSDARG0000001674319
pde12 / phosphodiesterase 12 / Q3TIU4* / Q6L8Q7* / 2,5-phosphodiesterase 12 *ENSDARG0000003096419
noctb / nocturnin b / NOCT* / Q9UK39* / nocturnin*ENSDARG0000007852517
nocta / nocturnin a / NOCT* / Q9UK39* / O35710* / nocturnin*ENSDARG0000007772617


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR032675  Leucine-rich repeat domain superfamily
 IPR034966  CCR4-NOT transcription complex subunit 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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