ENSDARG00000078525


Danio rerio

Features
Gene ID: ENSDARG00000078525
  
Biological name :noctb
  
Synonyms : noctb / nocturnin b
  
Possible biological names infered from orthology : NOCT / nocturnin / O35710 / Q9UK39
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 13930625
Gene end: 13952084
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099045
NCBI entrez gene - 568973     See in Manteia.
swissprot - F1RDV7
ZFIN ID - ZDB-GENE-110930-4
Ensembl - ENSDARG00000078525
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOCTENSGALG00000032957Gallus gallus
 NOCTENSG00000151014Homo sapiens
 NoctENSMUSG00000023087Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nocta / nocturnin a / NOCT* / Q9UK39* / O35710* / nocturnin*ENSDARG0000007772664
angel1 / angel homolog 1 (Drosophila) / 1 * / Q8VCU0* / Q9UNK9* / angel homolog 1*ENSDARG0000007756726
cnot6a / CCR4-NOT transcription complex, subunit 6a / CNOT6* / Q8K3P5* / Q9ULM6* / CCR4-NOT transcription complex subunit 6*ENSDARG0000000825525
cnot6b / CCR4-NOT transcription complex, subunit 6b / CNOT6* / Q8K3P5* / Q9ULM6* / CCR4-NOT transcription complex subunit 6*ENSDARG0000010107225
angel2 / Q5RGT6 / angel homolog 2 (Drosophila) / Q5VTE6* / angel homolog 2*ENSDARG0000001674325
A2BHJ4 / cnot6l / CCR4-NOT transcription complex, subunit 6-like / Q8VEG6* / Q96LI5*ENSDARG0000005459724
pde12 / phosphodiesterase 12 / Q3TIU4* / Q6L8Q7* / 2,5-phosphodiesterase 12 *ENSDARG0000003096423


Protein motifs (from Interpro)
Interpro ID Name
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR034965  Nocturnin, deadenylase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007623 circadian rhythm IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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