ENSDARG00000054597


Danio rerio

Features
Gene ID: ENSDARG00000054597
  
Biological name :cnot6l
  
Synonyms : A2BHJ4 / CCR4-NOT transcription complex, subunit 6-like / cnot6l
  
Possible biological names infered from orthology : Q8VEG6 / Q96LI5
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 38786481
Gene end: 38824466
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000156384
Ensembl peptide - ENSDARP00000071278
NCBI entrez gene - 553665     See in Manteia.
RefSeq - NM_001020638
RefSeq Peptide - NP_001018474
swissprot - A2BHJ4
ZFIN ID - ZDB-GENE-050522-302
Ensembl - ENSDARG00000054597
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT6LENSGALG00000010333Gallus gallus
 CNOT6LENSG00000138767Homo sapiens
 Cnot6lENSMUSG00000034724Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnot6b / CCR4-NOT transcription complex, subunit 6b / CNOT6* / Q8K3P5* / Q9ULM6* / CCR4-NOT transcription complex subunit 6*ENSDARG0000010107274
cnot6a / CCR4-NOT transcription complex, subunit 6a / CNOT6* / Q8K3P5* / Q9ULM6* / CCR4-NOT transcription complex subunit 6*ENSDARG0000000825574
angel1 / angel homolog 1 (Drosophila) / 1 * / Q8VCU0* / Q9UNK9* / angel homolog 1*ENSDARG0000007756720
angel2 / Q5RGT6 / angel homolog 2 (Drosophila) / Q5VTE6* / angel homolog 2*ENSDARG0000001674320
pde12 / phosphodiesterase 12 / Q3TIU4* / Q6L8Q7* / 2,5-phosphodiesterase 12 *ENSDARG0000003096419
nocta / nocturnin a / NOCT* / Q9UK39* / O35710* / nocturnin*ENSDARG0000007772616
noctb / nocturnin b / NOCT* / Q9UK39* / nocturnin*ENSDARG0000007852516


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR005135  Endonuclease/exonuclease/phosphatase
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0030014 CCR4-NOT complex ISS
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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