ENSDARG00000009194


Danio rerio

Features
Gene ID: ENSDARG00000009194
  
Biological name :col16a1
  
Synonyms : col16a1 / collagen, type XVI, alpha 1
  
Possible biological names infered from orthology : Collagen alpha-1(XVI) chain / collagen type XVI alpha 1 chain / Q07092 / Q8BLX7
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 38473758
Gene end: 38611814
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116089
Ensembl peptide - ENSDARP00000126433
Ensembl peptide - ENSDARP00000126509
swissprot - F1R6B4
swissprot - K7DYA5
swissprot - K7DYI0
ZFIN ID - ZDB-GENE-060503-351
Ensembl - ENSDARG00000009194
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000026836Gallus gallus
 Q07092ENSG00000084636Homo sapiens
 Q8BLX7ENSMUSG00000040690Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col4a5 / collagen, type IV, alpha 5 (Alport syndrome) / P29400* / collagen, type IV, alpha 5* / collagen type IV alpha 5 chain*ENSDARG0000005206331
col4a6 / collagen, type IV, alpha 6 / Q14031* / collagen type IV alpha 6 chain*ENSDARG0000005206130
col4a1 / collagen, type IV, alpha 1 / P02462* / P02463* / collagen type IV alpha 1 chain* / Collagen alpha-1(IV) chain Arresten*ENSDARG0000005500930
col4a4 / collagen, type IV, alpha 4 / Q9QZR9* / P53420* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSDARG0000000283129
col4a2 / collagen, type IV, alpha 2 / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSDARG0000010411028
col4a3 / collagen, type IV, alpha 3 / Q01955* / Q9QZS0* / collagen type IV alpha 3 chain* / Collagen alpha-3(IV) chain Tumstatin*ENSDARG0000000339527
col19a1 / collagen, type XIX, alpha 1ENSDARG0000007616314
zmp:0000000760ENSDARG0000007474511
si:dkey-117n7.4ENSDARG0000009206411
si:ch211-106n13.3ENSDARG000000526339
col21a1 / collagen, type XXI, alpha 1 / Q96P44* / collagen type XXI alpha 1 chain*ENSDARG000000253208
si:dkey-225n22.4ENSDARG000000772453


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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