ENSDARG00000055009


Danio rerio

Features
Gene ID: ENSDARG00000055009
  
Biological name :col4a1
  
Synonyms : col4a1 / collagen, type IV, alpha 1
  
Possible biological names infered from orthology : Collagen alpha-1(IV) chain Arresten / collagen type IV alpha 1 chain / P02462 / P02463
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 8634229
Gene end: 8670158
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000071763
Ensembl peptide - ENSDARP00000111488
swissprot - F1Q8S5
swissprot - F1QG79
ZFIN ID - ZDB-GENE-081105-114
Ensembl - ENSDARG00000055009
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL4A1ENSGALG00000036798Gallus gallus
 COL4A1ENSG00000187498Homo sapiens
 Col4a1ENSMUSG00000031502Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col4a5 / collagen, type IV, alpha 5 (Alport syndrome) / P29400* / collagen, type IV, alpha 5* / collagen type IV alpha 5 chain*ENSDARG0000005206357
col4a6 / collagen, type IV, alpha 6 / Q14031* / collagen type IV alpha 6 chain*ENSDARG0000005206145
col4a3 / collagen, type IV, alpha 3 / Q01955* / Q9QZS0* / collagen type IV alpha 3 chain* / Collagen alpha-3(IV) chain Tumstatin*ENSDARG0000000339545
col4a2 / collagen, type IV, alpha 2 / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSDARG0000010411043
col4a4 / collagen, type IV, alpha 4 / Q9QZR9* / P53420* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSDARG0000000283141
col16a1 / collagen, type XVI, alpha 1 / Q8BLX7* / Q07092* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSDARG0000000919430
col19a1 / collagen, type XIX, alpha 1ENSDARG0000007616315
zmp:0000000760ENSDARG0000007474513
si:dkey-117n7.4ENSDARG0000009206412
si:ch211-106n13.3ENSDARG0000005263310
col21a1 / collagen, type XXI, alpha 1 / Q96P44* / collagen type XXI alpha 1 chain*ENSDARG000000253207
si:dkey-225n22.4ENSDARG000000772453


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Anchoring fibril formation
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta increased diameter , abnormal
dorsal aorta increased elasticity , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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