ENSG00000187498


Homo sapiens

Features
Gene ID: ENSG00000187498
  
Biological name :COL4A1
  
Synonyms : COL4A1 / collagen type IV alpha 1 chain / P02462
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: -1
Band: q34
Gene start: 110148963
Gene end: 110307149
  
Corresponding Affymetrix probe sets: 211980_at (Human Genome U133 Plus 2.0 Array)   211981_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000478222
Ensembl peptide - ENSP00000364979
Ensembl peptide - ENSP00000443348
NCBI entrez gene - 1282     See in Manteia.
OMIM - 120130
RefSeq - XM_011521048
RefSeq - NM_001303110
RefSeq - NM_001845
RefSeq Peptide - NP_001290039
RefSeq Peptide - NP_001836
swissprot - A0A087WTY5
swissprot - F5H5K0
swissprot - P02462
Ensembl - ENSG00000187498
  
Related genetic diseases (OMIM): 180000 - ?Retinal arteries, tortuosity of, 180000
  611773 - Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps, 611773
  607595 - Brain small vessel disease with or without ocular anomalies, 607595
  175780 - Porencephaly 1, 175780
  269160 - Schizencephaly, 269160
  614519 - {Hemorrhage, intracerebral, susceptibility to}, 614519
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a1ENSDARG00000055009Danio rerio
 COL4A1ENSGALG00000036798Gallus gallus
 Col4a1ENSMUSG00000031502Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815361
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903152
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487148
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756547
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105246
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463633
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943633
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229324
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474918


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR016187  C-type lectin fold
 IPR036954  Collagen IV, non-collagenous domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IMP
 biological_processGO:0007420 brain development IMP
 biological_processGO:0007528 neuromuscular junction development IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 biological_processGO:0048514 blood vessel morphogenesis IMP
 biological_processGO:0061304 retinal blood vessel morphogenesis IMP
 biological_processGO:0061333 renal tubule morphogenesis IMP
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0071711 basement membrane organization IMP
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer IMP
 cellular_componentGO:0005604 basement membrane IC
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix ISS
 molecular_functionGO:0005201 extracellular matrix structural constituent IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030023 extracellular matrix constituent conferring elasticity IC
 molecular_functionGO:0048407 platelet-derived growth factor binding IDA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Anchoring fibril formation
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Scavenging by Class A Receptors
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000107 Renal cysts 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000483 Astigmatism 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000540 Hypermetropia 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000556 Retinal dystrophy 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000573 Retinal hemorrhage 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000577 Exotropia 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000622 Blurred vision 
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0001123 Visual field defects 
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 HP:0001136 Retinal arteriolar tortuosity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001297 Stroke 
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001460 Aplasia/Hypoplasia involving the musculature "Absence or underdevelopment of the musculature." [HPO:curators]
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 HP:0001878 Hemolytic anemia 
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 HP:0002077 Migraine with aura 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002132 Porencephaly 
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 HP:0002140 Ischemic stroke 
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 HP:0002273 Tetraparesis 
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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 HP:0002451 Limb dystonia 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003394 Muscle cramps 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004944 Cerebral aneurysm "The presence of a localized dilatation or ballooning of a cerebral artery." [HPO:curators]
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 HP:0005115 Supraventricular arrhythmia 
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 HP:0005562 Multiple renal cysts 
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 HP:0006859 Posterior leukoencephalopathy 
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 HP:0007209 Facial paralysis due to cranial nerve VII compression "Facial nerve paralysis (facial palsy) caused by compression (with ensuing loss of function) of the facial nerve (i.e., the seventh cranial nerve)." [HPO:curators]
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 HP:0007227 Brain macrogyria and polymicrogyria 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007731 Chorioretinal dysplasia 
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 HP:0007894 Hypopigmentation of the fundus 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0007973 Retinal dysplasia 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009918 Ectopia pupillae "A malposition of the pupil." [HPO:curators]
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 HP:0010508 Metatarsus valgus "A condition in which the anterior part of the foot rotates outward away from the midline of the body and the heel remains straight." [HPO:curators]
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 HP:0010636 Schizencephaly "The presence of a cleft in the cerebral cortex unilaterally or bilaterally, usually located in the frontal area." [HPO:curators]
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 HP:0011496 Corneal vascularization "Ingrowth of vessels into the corneal epithelium." [DDD:ncarter]
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 HP:0011500 Polycoria "Multiple pupils." [DDD:ncarter]
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 HP:0012400 Abnormal aldolase level "An abnormal concentration of aldolase in the serum. Aldolase is an enzyme responsible for converting fructose 1,6-bisphosphate into the triose phosphates dihydroxyacetone phosphate and glyceraldehyde 3-phosphate." [HPO:probinson]
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 HP:0012841 Retinal vascular tortuosity "The presence of an increased number of twists and turns of the retinal blood vessels." [HPO:probinson]
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 HP:0030880 Raynaud phenomenon 
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 HP:0040081 Abnormal levels of creatine kinase in blood 
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 HP:0045040 Abnormal lactate dehydrogenase activity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000197565 COL4A6 / Q14031 / collagen type IV alpha 6 chain  / -
 ENSG00000188153 COL4A5 / P29400 / collagen type IV alpha 5 chain  / -
 ENSG00000134871 COL4A2 / P08572 / collagen type IV alpha 2 chain  / - / complex
 ENSG00000187498 COL4A1 / P02462 / collagen type IV alpha 1 chain  / - / complex
 ENSG00000038945 MSR1 / P21757 / macrophage scavenger receptor 1  / reaction / complex






 

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