ENSG00000081052


Homo sapiens

Features
Gene ID: ENSG00000081052
  
Biological name :COL4A4
  
Synonyms : COL4A4 / collagen type IV alpha 4 chain / P53420
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q36.3
Gene start: 227002711
Gene end: 227164453
  
Corresponding Affymetrix probe sets: 214602_at (Human Genome U133 Plus 2.0 Array)   229779_at (Human Genome U133 Plus 2.0 Array)   241565_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000379866
Ensembl peptide - ENSP00000494516
NCBI entrez gene - 1286     See in Manteia.
OMIM - 120131
RefSeq - XM_017003300
RefSeq - NM_000092
RefSeq - XM_017003298
RefSeq - XM_017003299
RefSeq - XM_005246281
RefSeq - XM_005246282
RefSeq - XM_006712246
RefSeq - XM_011510557
RefSeq - XM_011510558
RefSeq - XM_011510559
RefSeq - XM_011510560
RefSeq - XM_011510561
RefSeq - XM_011510562
RefSeq - XM_011510565
RefSeq - XM_011510566
RefSeq - XM_011510567
RefSeq - XM_011510568
RefSeq - XM_011510569
RefSeq - XM_011510570
RefSeq - XM_017003296
RefSeq - XM_017003297
RefSeq Peptide - NP_000083
swissprot - P53420
Ensembl - ENSG00000081052
  
Related genetic diseases (OMIM): 120131 - Hematuria, familial benign
  203780 - Alport syndrome, autosomal recessive, 203780
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a4ENSDARG00000002831Danio rerio
 ENSGALG00000043175Gallus gallus
 ENSGALG00000004946Gallus gallus
 Col4a4ENSMUSG00000067158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756550
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487149
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815348
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749845
COL4A3 / Q01955 / collagen type IV alpha 3 chainENSG0000016903144
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943632
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463632
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229324
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474917


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR016187  C-type lectin fold
 IPR036954  Collagen IV, non-collagenous domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0032836 glomerular basement membrane development IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005605 basal lamina IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 molecular_functionGO:0005201 extracellular matrix structural constituent IMP


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Anchoring fibril formation
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000123 Nephritis "The presence of inflammation affecting the kidney." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0003676 Progressive disorder 
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 HP:0003774 End stage renal disease 
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 HP:0004722 Thickening of the glomerular basement membrane on renal biopsy 
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 HP:0011501 Anterior lenticonus "A conical projection of the anterior surface of the lens, occurring as a developmental anomaly." [DDD:gblack]
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 HP:0030034 Diffuse glomerular basement membrane lamellation "Presence of abnormal additional layers of the basement membrane of the glomerulus." []
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000169031 COL4A3 / Q01955 / collagen type IV alpha 3 chain  / complex / -
 ENSG00000188153 COL4A5 / P29400 / collagen type IV alpha 5 chain  / complex / -
 ENSG00000081052 COL4A4 / P53420 / collagen type IV alpha 4 chain  / -






 

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