ENSG00000169031


Homo sapiens

Features
Gene ID: ENSG00000169031
  
Biological name :COL4A3
  
Synonyms : COL4A3 / collagen type IV alpha 3 chain / Q01955
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q36.3
Gene start: 227164565
Gene end: 227314792
  
Corresponding Affymetrix probe sets: 214641_at (Human Genome U133 Plus 2.0 Array)   216367_at (Human Genome U133 Plus 2.0 Array)   216368_s_at (Human Genome U133 Plus 2.0 Array)   216893_s_at (Human Genome U133 Plus 2.0 Array)   216896_at (Human Genome U133 Plus 2.0 Array)   216898_s_at (Human Genome U133 Plus 2.0 Array)   222073_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000302781
Ensembl peptide - ENSP00000379823
Ensembl peptide - ENSP00000493493
Ensembl peptide - ENSP00000495177
NCBI entrez gene - 1285     See in Manteia.
OMIM - 120070
RefSeq - XM_017003295
RefSeq - NM_000091
RefSeq - XM_006712245
RefSeq - XM_011510555
RefSeq - XM_011510556
RefSeq - XM_005246277
RefSeq - XM_005246280
RefSeq Peptide - NP_000082
swissprot - Q01955
swissprot - H7BXM4
Ensembl - ENSG00000169031
  
Related genetic diseases (OMIM): 104200 - Alport syndrome, autosomal dominant, 104200
  141200 - Hematuria, benign familial, 141200
  203780 - Alport syndrome, autosomal recessive, 203780
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a3ENSDARG00000003395Danio rerio
 COL4A3ENSGALG00000038612Gallus gallus
 Col4a3ENSMUSG00000079465Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A5 / P29400 / collagen type IV alpha 5 chainENSG0000018815355
COL4A1 / P02462 / collagen type IV alpha 1 chainENSG0000018749852
COL4A6 / Q14031 / collagen type IV alpha 6 chainENSG0000019756546
COL4A2 / P08572 / collagen type IV alpha 2 chainENSG0000013487145
COL4A4 / P53420 / collagen type IV alpha 4 chainENSG0000008105245
Q07092 / COL16A1 / collagen type XVI alpha 1 chainENSG0000008463632
Q8NFW1 / COL22A1 / collagen type XXII alpha 1 chainENSG0000016943631
Q14993 / COL19A1 / collagen type XIX alpha 1 chainENSG0000008229323
Q96P44 / COL21A1 / collagen type XXI alpha 1 chainENSG0000012474917


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR016187  C-type lectin fold
 IPR036954  Collagen IV, non-collagenous domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process IDA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007166 cell surface receptor signaling pathway IEA
 biological_processGO:0007605 sensory perception of sound TAS
 biological_processGO:0008015 blood circulation TAS
 biological_processGO:0008283 cell proliferation IDA
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 biological_processGO:0016525 negative regulation of angiogenesis IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0032836 glomerular basement membrane development IEA
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 biological_processGO:0072577 endothelial cell apoptotic process IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005178 integrin binding TAS
 molecular_functionGO:0005198 structural molecule activity NAS
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008191 metalloendopeptidase inhibitor activity NAS


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Anchoring fibril formation
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000099 Glomerulonephritis 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000123 Nephritis "The presence of inflammation affecting the kidney." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001134 Anterior polar cataract "A `polar cataract` (HP:0010696) that affects the `anterior pole of the lens` (FMA:58897)." [HPO:probinson]
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 HP:0001142 Lenticonus 
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 HP:0001425 Heterogeneous 
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 HP:0002148 Hypophosphatemia "A lower than normal level of blood phosphate." [HPO:curators]
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 HP:0002157 Azotemia 
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 HP:0003676 Progressive disorder 
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 HP:0003680 Nonprogressive disorder 
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 HP:0003774 End stage renal disease 
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 HP:0004722 Thickening of the glomerular basement membrane on renal biopsy 
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 HP:0011501 Anterior lenticonus "A conical projection of the anterior surface of the lens, occurring as a developmental anomaly." [DDD:gblack]
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 HP:0012577 Thin glomerular basement membrane "Reduction in thickness of the basal lamina of the glomerulus of the kidney." [HPO:probinson]
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 HP:0030034 Diffuse glomerular basement membrane lamellation "Presence of abnormal additional layers of the basement membrane of the glomerulus." []
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000169031 COL4A3 / Q01955 / collagen type IV alpha 3 chain  / -
 ENSG00000188153 COL4A5 / P29400 / collagen type IV alpha 5 chain  / complex / -
 ENSG00000081052 COL4A4 / P53420 / collagen type IV alpha 4 chain  / complex / -






 

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