Manteia

ENSGALG00000038612

Gallus gallus

Features

Gene ID:	ENSGALG00000038612

Biological name :	COL4A3

Synonyms :	COL4A3 / collagen type IV alpha 3 chain

Possible biological names infered from orthology :	Collagen alpha-3(IV) chain Tumstatin / Q01955 / Q9QZS0

Species:	Gallus gallus

Chr. number:	9
Strand:	1
Band:
Gene start:	9384943
Gene end:	9430089

Corresponding Affymetrix probe sets:	Gga.17848.1.S1_at (Chicken Array) GgaAffx.25748.2.S1_s_at (Chicken Array) GgaAffx.25748.5.S1_x_at (Chicken Array) GgaAffx.2973.1.S1_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000053427 NCBI entrez gene - 424797 See in Manteia. RefSeq - XM_015276989 swissprot - A0A1D5PKR6 Ensembl - ENSGALG00000038612

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
COL4A5 / collagen type IV alpha 5 chain / P29400* / collagen, type IV, alpha 5*	ENSGALG00000008141	53
COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*	ENSGALG00000036798	52
COL4A6 / collagen type IV alpha 6 chain / Q14031* / collagen, type IV, alpha 6*	ENSGALG00000008266	44
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*	ENSGALG00000016843	43
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*	ENSGALG00000038022	31
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*	ENSGALG00000004946	30
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *	ENSGALG00000043584	22
COL21A1 / collagen type XXI alpha 1 chain / Q96P44*	ENSGALG00000016292	17
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*	ENSGALG00000026836	7
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*	ENSGALG00000043175	6

Protein motifs (from Interpro)

Interpro ID	Name
IPR001442	Collagen IV, non-collagenous
IPR008160	Collagen triple helix repeat
IPR016187	C-type lectin fold

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0006919	activation of cysteine-type endopeptidase activity involved in apoptotic process	IEA
biological_process	GO:0007166	cell surface receptor signaling pathway	IEA
biological_process	GO:0008283	cell proliferation	IEA
biological_process	GO:0016525	negative regulation of angiogenesis	IEA
biological_process	GO:0032836	glomerular basement membrane development	IEA
biological_process	GO:0038063	collagen-activated tyrosine kinase receptor signaling pathway	IEA
biological_process	GO:0072577	endothelial cell apoptotic process	IEA
cellular_component	GO:0005576	extracellular region	IEA
cellular_component	GO:0005581	collagen trimer	IEA
cellular_component	GO:0005587	collagen type IV trimer	IEA
cellular_component	GO:0005604	basement membrane	IEA
cellular_component	GO:0005783	endoplasmic reticulum	IEA
cellular_component	GO:0043231	intracellular membrane-bounded organelle	IEA
molecular_function	GO:0005178	integrin binding	IEA
molecular_function	GO:0005201	extracellular matrix structural constituent	IEA

Pathways (from Reactome)

Pathway description

Collagen degradation

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr