ENSGALG00000008266


Gallus gallus

Features
Gene ID: ENSGALG00000008266
  
Biological name :COL4A6
  
Synonyms : COL4A6 / collagen type IV alpha 6 chain
  
Possible biological names infered from orthology : collagen, type IV, alpha 6 / Q14031
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 14111920
Gene end: 14151756
  
Corresponding Affymetrix probe sets: Gga.13762.1.S1_at (Chicken Array)   Gga.18691.1.S1_at (Chicken Array)   Gga.9276.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013432
NCBI entrez gene - 422350     See in Manteia.
RefSeq - XM_015278603
RefSeq - XM_015278604
RefSeq - XM_420322
swissprot - F1P3T8
Ensembl - ENSGALG00000008266
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col4a6ENSDARG00000052061Danio rerio
 COL4A6ENSG00000197565Homo sapiens
 Col4a6ENSMUSG00000031273Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL4A2 / collagen, type IV, alpha 2 precursor / P08122* / P08572* / collagen type IV alpha 2 chain* / Collagen alpha-2(IV) chain Canstatin*ENSGALG0000001684353
COL4A5 / collagen type IV alpha 5 chain / P29400* / collagen, type IV, alpha 5*ENSGALG0000000814150
COL4A1 / collagen type IV alpha 1 chain / P02462* / P02463* / Collagen alpha-1(IV) chain Arresten*ENSGALG0000003679847
COL4A3 / collagen type IV alpha 3 chain / Q01955* / Q9QZS0* / Collagen alpha-3(IV) chain Tumstatin*ENSGALG0000003861244
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG0000000494633
COL22A1 / collagen alpha-1(XXII) chain precursor / Q8NFW1* / collagen, type XXII, alpha 1* / collagen type XXII alpha 1 chain*ENSGALG0000003802230
COL19A1 / collagen type XIX alpha 1 chain / Q0VF58* / Q14993* / Collagen alpha-1(XIX) chain *ENSGALG0000004358422
COL21A1 / collagen type XXI alpha 1 chain / Q96P44*ENSGALG0000001629216
COL4A4* / P53420* / Q9QZR9* / Collagen alpha-4(IV) chain * / collagen type IV alpha 4 chain*ENSGALG000000431758
Q07092* / Q8BLX7* / COL16A1* / Collagen alpha-1(XVI) chain * / collagen type XVI alpha 1 chain*ENSGALG000000268368


Protein motifs (from Interpro)
Interpro ID Name
 IPR001442  Collagen IV, non-collagenous
 IPR008160  Collagen triple helix repeat
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0038063 collagen-activated tyrosine kinase receptor signaling pathway IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005587 collagen type IV trimer IEA
 cellular_componentGO:0005604 basement membrane IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Crosslinking of collagen fibrils
Laminin interactions
Non-integrin membrane-ECM interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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